Related papers: Lattice stretching bistability and dynamic heterog…
Single molecule experiments on single- and double stranded DNA have sparked a renewed interest in the force-extension of polymers. The extensible Freely Jointed Chain (FJC) model is frequently invoked to explain the observed behavior of…
Motivated by recent observations of integer and fractional Chern insulators in rhombohedral graphene stacks aligned with hexagonal boron nitride (hBN), we propose and study a model in which the moir\'e potential is defined by the pattern of…
The symmetries of the DNA double helix require a new term in its linear response to stress: the coupling between twist and stretch. Recent experiments with torsionally-constrained single molecules give the first direct measurement of this…
The extended Hubbard Hamiltonian is a widely accepted model for uncovering the effects of strong correlations on the phase diagram of low-dimensional systems, and a variety of theoretical techniques have been applied to it. In this paper…
We present a numerical study of the dynamics of a non-ideal fluid subject to a density-dependent pseudo-potential characterized by a hierarchy of nested attractive and repulsive interactions. It is shown that above a critical threshold of…
The pseudopotential method is one of the most popular extensions of the lattice Boltzmann method (LBM) for phase change and multiphase flow simulation. One attractive feature of the original proposed method consists on its simplicity of…
We measure stretched exponential behavior, exp(- (t/t_0)**beta), over many decades in a one-dimensional array of coupled chaotic electronic elements just above a crisis-induced intermittency transition. There is strong spatial heterogeneity…
A panoptic view of architectured planar lattices based on star-polygon tilings was developed. Four star-polygon-based lattice sub-families, formed of systematically arranged triangles, squares, or hexagons, were investigated numerically and…
We present a continuum model for symmetry-breaking phase transformations in intercalation compounds, based on Ericksen's multi-well energy formulation. The model predicts the nucleation and growth of crystallographic microstructures in…
Two-state cooperativity is an important characteristic in protein folding. It is defined by a depletion of states lying energetically between folded and unfolded conformations. While there are different ways to test for two-state…
It has been observed that certain classical chains admit topologically protected zero-energy modes that are localized on the boundaries. The static features of such localized modes are captured by linearized equations of motion, but the…
This paper aims at a comprehensive understanding on the novel elastic property of double-stranded DNA (dsDNA) discovered very recently through single-molecule manipulation techniques. A general elastic model for double-stranded biopolymers…
We introduce a system where an elastic lattice of particles is moved slowly at a constant velocity under the influence of a local external potential, construct a rigid-body model through simplification processes, and show that the two…
Using a two dimensional lattice model we investigate the crack growth under the influence of remote tensile forces as well as due to an internally applied pressure (hydraulic fracturing). For homogeneous elastic properties we present…
The effect of different Monte Carlo move sets on the the folding kinetics of lattice polymer chains is studied from the geometry of the conformation-network. The networks have the characteristics of small- world. The Monte Carlo move, rigid…
Stability of solitons in parity-time (PT)-symmetric periodic potentials (optical lattices) is analyzed in both one- and two-dimensional systems. First we show analytically that when the strength of the gain-loss component in the PT lattice…
We investigate the dynamics of a three-state stochastic lattice gas, consisting of holes and two oppositely "charged" species of particles, under the influence of an "electric" field, at zero total charge. Interacting only through an…
Chain molecules play important roles in industry and in living cells. Our focus here is on distinct ways of modeling the stiffness inherent in a chain molecule. We consider three types of stiffnesses -- one yielding an energy penalty for…
Our recent study on the Bethe lattice reported that a discontinuous percolation transition emerges as the number of occupied links increases and each node rewires its links to locally suppress the growth of neighboring clusters. However,…
Almost all the polymer crystals have several polymorphic modifications. Their structure and existence conditions, as well as transitions between them are not understood even in the case of the 'model' polymer polyethylene (PE). For analysis…