English
Related papers

Related papers: Integration of cellular signals in chattering envi…

200 papers

Exploiting the information provided by the molecular noise of a biological process has proven to be valuable in extracting knowledge about the underlying kinetic parameters and sources of variability from single cell measurements. However,…

Quantitative Methods · Quantitative Biology 2013-08-30 Jakob Ruess , Andreas Milias-Argeitis , John Lygeros

With the completion of human genome mapping, the focus of scientists seeking to explain the biological complexity of living systems is shifting from analyzing the individual components (such as a particular gene or biochemical reaction) to…

Molecular Networks · Quantitative Biology 2010-01-28 Sitabhra Sinha , T Jesan , Nivedita Chatterjee

We consider the dependence of the electron transfer in photosynthetic complexes on correlation properties of random fluctuations of the protein environment. The electron subsystem is modeled by a finite network of connected electron…

Biological Physics · Physics 2015-06-23 Alexander I. Nesterov , Gennady P. Berman

Collective cell responses to exogenous cues depend on cell-cell interactions. In principle, these can result in enhanced sensitivity to weak and noisy stimuli. However, this has not yet been shown experimentally, and, little is known about…

In recent years experiments have demonstrated that living cells can measure low chemical concentrations with high precision, and much progress has been made in understanding what sets the fundamental limit to the precision of chemical…

Molecular Networks · Quantitative Biology 2015-05-26 Pieter Rein ten Wolde , Nils B. Becker , Thomas E. Ouldridge , A. Mugler

Self-organized network dynamics prevails for systems across physics, biology and engineering. How external signals generate distributed responses in networked systems fundamentally underlies their function, yet is far from fully understood.…

Adaptation and Self-Organizing Systems · Physics 2019-08-05 Xiaozhu Zhang , Sarah Hallerberg , Moritz Matthiae , Dirk Witthaut , Marc Timme

Living organisms must respond to environmental changes. Generally, accurate and rapid responses are provided by simple, unidirectional networks that connect inputs with outputs. Besides accuracy and speed, biological responses should also…

Molecular Networks · Quantitative Biology 2021-09-01 Masayo Inoue , Kunihiko Kaneko

Cells continuously sense their surroundings to detect modifications and generate responses. Very often changes in extracellular concentrations initiate signaling cascades that eventually result in changes in gene expression. Increasing…

Cell Behavior · Quantitative Biology 2024-08-27 Alan Givré , Alejandro Colman-Lerner , Silvina Ponce Dawson

One of the primary computational requirements of a cellular system is the ability to transfer information between spatially separated components. To accomplish this, biology uses diverse physical channels including production or release of…

Biological Physics · Physics 2023-08-11 Samuel Bryant , Benjamin Machta

Bacteria possess diverse mechanisms to regulate their motility in response to environmental and physiological signals, enabling them to navigate complex habitats and adapt their behavior. Among these mechanisms, interspecies recognition…

Populations and Evolution · Quantitative Biology 2025-12-01 Mattia Mattei , David Soriano Paños , Mahantesh Halappanavar , Alex Arenas

While noise is generally associated with uncertainties and often has a negative connotation in engineering, living organisms have evolved to adapt to (and even exploit) such uncertainty to ensure the survival of a species or implement…

Molecular Networks · Quantitative Biology 2022-09-29 Corentin Briat , Mustafa Khammash

Neurons in the central nervous system are affected by complex and noisy signals due to fluctuations in their cellular environment and in the inputs they receive from many other cells 1,2. Such noise usually increases the probability that a…

Neurons and Cognition · Quantitative Biology 2008-05-06 Boris S. Gutkin , Juergen Jost , Henry C. Tuckwell

A model for autonomous feedback control of particle transport through a large number of channels is introduced. Interactions among the particles can lead to a strong suppression of fluctuations in the particle number statistics. Within a…

Statistical Mechanics · Physics 2016-02-25 Tobias Brandes

The nervous system displays a variety of rhythms in both waking and sleep. These rhythms have been closely associated with different behavioral and cognitive states, but it is still unknown how the nervous system makes use of these rhythms…

Dynamical Systems · Mathematics 2007-05-23 Nancy Kopell

Instead of treating the noise as a detrimental effect, can we use it as an information carrier? In this letter, we provide the conceptual and mathematical foundations of wireless communication utilizing noise and random signals in general.…

Information Theory · Computer Science 2023-12-22 Ertugrul Basar

Chaotic synchronization is generally extremely sensitive to the presence of noise and other inference in the channel. Is this sensitivity a fundamental property of chaotic synchronization or is it related to the choice of synchronization…

Chaotic Dynamics · Physics 2007-05-23 A. S. Dmitriev , M. Hasler , G. Kassian , A. D. Khilinsky

The Notch-Delta signaling pathway mediates cell differentiation implicated in many regulatory processes including spatiotemporal patterning in tissues by promoting alternate cell fates between neighboring cells. At the multicellular level,…

Cell Behavior · Quantitative Biology 2022-10-12 Madeline Galbraith , Federico Bocci , José N. Onuchic

We study the effect of memory on synchronization of identical chaotic systems driven by common external noises. Our examples show that while in general synchronization transition becomes more difficult to meet when memory range increases,…

Chaotic Dynamics · Physics 2009-11-11 Rafael Morgado , Michal Ciesla , Lech Longa , Fernando A. Oliveira

A single qubit driven by an appropriate sequence of control pulses can serve as a spectrometer of local noise affecting its energy splitting. We show that by driving and observing two spatially separated qubits, it is possible to…

Mesoscale and Nanoscale Physics · Physics 2016-07-27 Piotr Szańkowski , Marek Trippenbach , Łukasz Cywiński

The interplay between nonlinear dynamic systems and noise has proved to be of great relevance in several application areas. In this presentation, we focus on the areas of information transmission and storage. We review some recent results…

Other Condensed Matter · Physics 2017-11-22 P. I. Fierens , G. A. Patterson , A. A. García , D. F. Grosz