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Cryo-electron microscopy (cryo-EM) has become a tool of fundamental importance in structural biology, helping us understand the basic building blocks of life. The algorithmic challenge of cryo-EM is to jointly estimate the unknown 3D poses…

Computer Vision and Pattern Recognition · Computer Science 2022-09-01 Axel Levy , Frédéric Poitevin , Julien Martel , Youssef Nashed , Ariana Peck , Nina Miolane , Daniel Ratner , Mike Dunne , Gordon Wetzstein

In inertial confinement fusion (ICF), X-ray radiography is a critical diagnostic for measuring implosion dynamics, which contains rich 3D information. Traditional methods for reconstructing 3D volumes from 2D radiographs, such as filtered…

Electron ptychography describes a family of algorithms which are used to enable the reconstruction of complex specimen transmission functions of a sample in order to obtain both phase and amplitude information, as applied within the realms…

Optics · Physics 2025-03-17 L. Clark , P. D. Nellist

Deep learning has the potential to improve colonoscopy by enabling 3D reconstruction of the colon, providing a comprehensive view of mucosal surfaces and lesions, and facilitating the identification of unexplored areas. However, the…

A method is proposed for high-resolution, three-dimensional reconstruction of internal structure of objects from planar transmission images. The described approach can be used with any form of radiation or matter waves, in principle,…

Optics · Physics 2022-08-24 T. E. Gureyev , H. M. Quiney , L. J. Allen

Cryo-EM reconstruction algorithms seek to determine a molecule's 3D density map from a series of noisy, unlabeled 2D projection images captured with an electron microscope. Although reconstruction algorithms typically model the 3D volume as…

Biomolecules · Quantitative Biology 2021-07-06 Ellen D. Zhong , Adam Lerer , Joseph H. Davis , Bonnie Berger

To date, high-resolution (< 1 nm) imaging of extended objects in three-dimensions (3D) has not been possible. A restriction known as the Crowther criterion forces a tradeoff between object size and resolution for 3D reconstructions by…

Materials Science · Physics 2014-11-20 Robert Hovden , Peter Ercius , Yi Jiang , Deli Wang , Yingchao Yu , Hector D. Abruna , Veit Elser , David A. Muller

We introduce a novel class of projectors for 3D cone beam tomographic reconstruction. Analytical formulas are derived to compute the relationship between the volume of a voxel projected onto a detector pixel and its contribution to the line…

Image and Video Processing · Electrical Eng. & Systems 2025-03-27 Vojtěch Kulvait , Julian Moosmann , Georg Rose

Direct ptychography enables the retrieval of information encoded in the phase of an electron wave passing through a thin sample by deconvolving the interference effects of a converged probe with known aberrations. Under the weak phase…

Ptychography is a powerful computational imaging technique that transforms a collection of low-resolution images into a high-resolution sample reconstruction. Unfortunately, algorithms that are currently used to solve this reconstruction…

Refraction is a common physical phenomenon and has long been researched in computer vision. Objects imaged through a refractive object appear distorted in the image as a function of the shape of the interface between the media. This hinders…

Computer Vision and Pattern Recognition · Computer Science 2023-06-01 Antonin Sulc , Imari Sato , Bastian Goldluecke , Tali Treibitz

Nowadays, three-dimensional reconstruction is used in various fields like computer vision, computer graphics, mixed reality and digital twin. The three-dimensional reconstruction of cultural heritage objects is one of the most important…

Computer Vision and Pattern Recognition · Computer Science 2024-06-24 F. S. Mortazavi , M. Saadatseresht

Flame tomography is a compelling approach for extracting large amounts of data from experiments via 3-D thermochemical reconstruction. Recent efforts employing neural-network flame representations have suggested improved reconstruction…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Nicolas Tricard , Zituo Chen , Sili Deng

The reconstruction of three-dimensional models of coronary arteries is of great significance for the localization, evaluation and diagnosis of stenosis and plaque in the arteries, as well as for the assisted navigation of interventional…

Image and Video Processing · Electrical Eng. & Systems 2024-12-10 Lu Wang , Dong-xue Liang , Xiao-lei Yin , Jing Qiu , Zhi-yun Yang , Jun-hui Xing , Jian-zeng Dong , Zhao-yuan Ma

Purpose: Handheld gamma cameras with coded aperture collimators are under investigation for intraoperative imaging in nuclear medicine. Coded apertures are a promising collimation technique for applications such as lymph node localization…

Medical Physics · Physics 2024-01-22 Tobias Meißner , Laura Antonia Cerbone , Paolo Russo , Werner Nahm , Jürgen Hesser

This paper introduces Claycode, a novel 2D scannable code designed for extensive stylization and deformation. Unlike traditional matrix-based codes (e.g., QR codes), Claycodes encode their message in a tree structure. During the encoding…

Graphics · Computer Science 2025-05-14 Marco Maida , Alberto Crescini , Marco Perronet , Elena Camuffo

Extending the success of 2D Large Kernel to 3D perception is challenging due to: 1. the cubically-increasing overhead in processing 3D data; 2. the optimization difficulties from data scarcity and sparsity. Previous work has taken the first…

Computer Vision and Pattern Recognition · Computer Science 2023-03-29 Tao Lu , Xiang Ding , Haisong Liu , Gangshan Wu , Limin Wang

Computed Tomography (CT) reconstruction is a fundamental component to a wide variety of applications ranging from security, to healthcare. The classical techniques require measuring projections, called sinograms, from a full 180$^\circ$…

Computer Vision and Pattern Recognition · Computer Science 2018-07-12 Rushil Anirudh , Hyojin Kim , Jayaraman J. Thiagarajan , K. Aditya Mohan , Kyle Champley , Timo Bremer

We consider the two dimensional quantitative imaging problem of recovering a radiative source inside an absorbing and scattering medium from knowledge of the outgoing radiation measured at the boundary. The medium has an anisotropic…

Numerical Analysis · Mathematics 2021-01-21 Hiroshi Fujiwara , Kamran Sadiq , Alexandru Tamasan

We develop an algorithm capable of imaging a three-dimensional object given a collection of two-dimensional images of that object that are significantly influenced by the curvature of the Ewald sphere. These two-dimensional images cannot be…

Instrumentation and Detectors · Physics 2021-03-02 J. P. J. Chen , K. E. Schmidt , J. C. H. Spence , R. A. Kirian
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