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Many types of bacteria can survive under stress by switching stochastically between two different phenotypes: the "normals" who multiply fast, but are vulnerable to stress, and the "persisters" who hardly multiply, but are resilient to…

Populations and Evolution · Quantitative Biology 2011-11-10 Ingo Lohmar , Baruch Meerson

It is well-established that including spatial structure and stochastic noise in models for predator-prey interactions invalidates the classical deterministic Lotka-Volterra picture of neutral population cycles. In contrast, stochastic…

Populations and Evolution · Quantitative Biology 2011-09-20 Uwe C. Tauber

Understanding the mechanisms governing population extinctions is of key importance to many problems in ecology and evolution. Stochastic factors are known to play a central role in extinction, but the interactions between a population's…

Populations and Evolution · Quantitative Biology 2017-11-22 Christopher Spalding , Charles R. Doering , Glenn R. Flierl

Genetic variation in a population can sometimes arise so fast as to modify ecosystem dynamics. Such phenomena have been observed in natural predator-prey systems, and characterized in the laboratory as showing unusual phase relationships in…

Populations and Evolution · Quantitative Biology 2025-03-25 Hong-Yan Shih , Nigel Goldenfeld

Ecological systems are complex dynamical systems. Modelling efforts on ecosystems' dynamical stability have revealed that population dynamics, being highly nonlinear, can be governed by complex fluctuations. Indeed, experimental and field…

Dynamical Systems · Mathematics 2020-02-19 Lluís Alsedà , José Tomás Lázaro , Ricard Solé , Blai Vidiella , Josep Sardanyés

We consider a stochastic model for an evolving population. We show that in the presence of genotype extinctions the population dies out for a low mutation probability but may survive for a high mutation probability. This turns upside down…

Populations and Evolution · Quantitative Biology 2014-10-24 Rinaldo B. Schinazi

The question of whether biological populations survive or are eventually driven to extinction has long been examined using mathematical models. In this work we study population survival or extinction using a stochastic, discrete…

Populations and Evolution · Quantitative Biology 2021-09-15 Yifei Li , Stuart T. Johnston , Pascal R. Buenzli , Peter van Heijster , Matthew J. Simpson

We consider continuous state branching processes that are perturbed by a Brownian motion. These processes are constructed as the unique strong solution of a stochastic differential equation. The long-term extinction and explosion behaviours…

Probability · Mathematics 2016-06-17 Sandra Palau , Juan Carlos Pardo

We consider a spatial stochastic model for a pathogen population growing inside a host that attempts to eliminate the pathogens through its immune system. The pathogen population is divided into different types. A pathogen can either…

Probability · Mathematics 2026-02-03 Fábio Lopes , Alejandro Roldán-Correa

Sexually reproducing populations with small number of individuals may go extinct by stochastic fluctuations in sex determination, causing all their members to become male or female in a generation. In this work we calculate the time to…

Populations and Evolution · Quantitative Biology 2012-10-24 David M. Schneider , Eduardo do Carmo , Yaneer Bar-Yam , Marcus A. M. de Aguiar

I study a population model in which the reproduction rate lambda is inherited with mutation, favoring fast reproducers in the short term, but conflicting with a process that eliminates agglomerations of individuals. The model is a variant…

Statistical Mechanics · Physics 2021-06-02 Ronald Dickman

It is usually believed that Darwin's theory leads to a smooth gradual evolution, so that mass extinctions must be caused by external shocks. However, it has recently been argued that mass extinctions arise from the intrinsic dynamics of…

Condensed Matter · Physics 2015-06-25 Per Bak , Maya Paczuski

We propose a stochastic model for evolution. Births and deaths of species occur with constant probabilities. Each new species is associated with a fitness sampled from the uniform distribution on [0,1]. Every time there is a death event…

Probability · Mathematics 2010-11-09 Herve Guiol , Fabio P. Machado , Rinaldo B. Schinazi

We study a mechanistic mathematical model of extinction and coexistence in a generic hunter-prey ecosystem. The model represents typical scenarios of human invasion and environmental change, characteristic of the late Pleistocene,…

Populations and Evolution · Quantitative Biology 2016-08-08 Guillermo Abramson , María F. Laguna , Marcelo N. Kuperman , Adrián Monjeau , José L. Lanata

We use interacting particle systems to investigate survival and extinction of a species with colonies located on each site of $\mathbb {Z}^d$. In each of the four models studied, an individual in a local population can reproduce, die or…

Probability · Mathematics 2012-05-15 Davide Borrello

We discuss a simple model of co-evolution. In order to emphasise the effect of interaction between individuals the entire population is subjected to the same physical environment. Species are emergent structures and extinction, origination…

Statistical Mechanics · Physics 2007-05-23 Kim Christensen , Simone A. di Collobiano , Matt Hall , Henrik J. Jensen

We study diffusion-controlled two-species annihilation with a finite number of particles. In this stochastic process, particles move diffusively, and when two particles of opposite type come into contact, the two annihilate. We focus on the…

Statistical Mechanics · Physics 2018-02-14 J. G. Amar , E. Ben-Naim , S. M. Davis , P. L. Krapivsky

A simple, but ``classical``, stochastic model for epidemic spread in a finite, but large, population is studied. The progress of the epidemic can be divided into three different phases that requires different tools to analyse. Initially the…

Populations and Evolution · Quantitative Biology 2018-05-29 Åke Svensson

We present a new model for extinction in which species evolve in bursts or `avalanches', during which they become on average more susceptible to environmental stresses such as harsh climates and so are more easily rendered extinct. Results…

adap-org · Physics 2008-02-03 M. E. J. Newman , B. W. Roberts

Predators often consume multiple prey and by mutually subsidizing a shared predator, the prey may reciprocally harm each other. When predation levels are high, this apparent competition can culminate in a prey species being displaced.…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber , Swati Patel
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