Related papers: Tractability results for the Double-Cut-and-Join c…
A $3$-connected graph $G$ is essentially $4$-connected if, for any $3$-cut $S\subseteq V(G)$ of $G$, at most one component of $G-S$ contains at least two vertices. We prove that every essentially $4$-connected maximal planar graph $G$ on…
Mathematical modeling is a standard approach to solve many real-world problems and {\em diversity} of solutions is an important issue, emerging in applying solutions obtained from mathematical models to real-world problems. Many studies…
We study the Parallel Task Scheduling problem $Pm|size_j|C_{\max}$ with a constant number of machines. This problem is known to be strongly NP-complete for each $m \geq 5$, while it is solvable in pseudo-polynomial time for each $m \leq 3$.…
The high-throughput short-reads RNA-seq protocols often produce paired-end reads, with the middle portion of the fragments being unsequenced. We explore if the full-length fragments can be computationally reconstructed from the sequenced…
We study the boundary of tractability for the Max-Cut problem in graphs. Our main result shows that Max-Cut above the Edwards-Erd\H{o}s bound is fixed-parameter tractable: we give an algorithm that for any connected graph with n vertices…
The Distance Geometry Problem (DGP) seeks to find positions for a set of points in geometric space when some distances between pairs of these points are known. The so-called discretization assumptions allow to discretize the search space of…
We generalize the technique of [Solving Dirichlet boundary-value problems on curved domains by extensions from subdomains, SIAM J. Sci. Comput. 34, pp. A497--A519 (2012)] to elliptic problems with mixed boundary conditions and elliptic…
The NP-complete problem Matching Cut is to decide if a graph has a matching that is also an edge cut of the graph. We prove new complexity results for Matching Cut restricted to $H$-free graphs, that is, graphs that do not contain some…
The role of dimensional regularization is discussed and compared with that of cut-off regularization in some quantum mechanical problems with ultraviolet divergence in two and three dimensions with special emphasis on the nucleon-nucleon…
Early literature on genome rearrangement modelling views the problem of computing evolutionary distances as an inherently combinatorial one. In particular, attention was given to estimating distances using the minimum number of events…
Melting of a bicrystal along the grain boundary is discussed. A triple junction plays a crucial role in the velocity selection problem in this case. In some range of the parameters an entirely analytical solution of this problem is given.…
In the distributed triangle detection problem, we have an $n$-vertex network $G=(V,E)$ with one player for each vertex of the graph who sees the edges incident on the vertex. The players communicate in synchronous rounds using the edges of…
Redistricting is the problem of dividing a state into a number $k$ of regions, called districts. Voters in each district elect a representative. The primary criteria are: each district is connected, district populations are equal (or nearly…
This paper deals with the Darcy-Forchheimer problem with two kinds of boundary conditions. We discretize the system by using the finite element methods and we propose two iterative schemes to solve the discrete problems. The well-posedness…
The widely studied edge modification problems ask how to minimally alter a graph to satisfy certain structural properties. In this paper, we introduce and study a new edge modification problem centered around transforming a given graph into…
The Planar Contraction problem is to test whether a given graph can be made planar by using at most k edge contractions. This problem is known to be NP-complete. We show that it is fixed-parameter tractable when parameterized by k.
This paper provides a short and transparent solution for the covering cost of white-grey trees which play a crucial role in the algorithm of Bergeron {\it et al.}\ to compute the rearrangement distance between two multichromosomal genomes…
It is known that difference equations generated as the Newton-Raphson iteration for quadratic equations are solvable in closed form, and the solution can be constructed from linear three-term recurrence relations with constant coefficients.…
In this paper, we examine the computational complexity of enumeration in certain genome rearrangement models. We first show that the Pairwise Rearrangement problem in the Single Cut-and-Join model (Bergeron, Medvedev, & Stoye, J. Comput.…
We derive the breakdown point for solutions of semi-discrete optimal transport problems, which characterizes the robustness of the multivariate quantiles based on optimal transport proposed in \cite{GS}. We do so under very mild…