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Given $n$ non-vertical lines in 3-space, their vertical depth (above/below) relation can contain cycles. We show that the lines can be cut into $O(n^{3/2}\mathop{\mathrm{polylog}} n)$ pieces, such that the depth relation among these pieces…
We introduce a new class of computationally tractable scattering problems in unbounded domains, which we call decomposable problems. In these decomposable problems, the computational domain can be split into a finite collection of…
We study the computational complexity of the graph modification problems Threshold Editing and Chain Editing, adding and deleting as few edges as possible to transform the input into a threshold (or chain) graph. In this article, we show…
(see paper for full abstract) Cut problems and connectivity problems on digraphs are two well-studied classes of problems from the viewpoint of parameterized complexity. After a series of papers over the last decade, we now have (almost)…
A graph is $c$-closed when every pair of nonadjacent vertices has at most $c-1$ common neighbors. In $c$-Closed Vertex Deletion, the input is a graph $G$ and an integer $k$ and we ask whether $G$ can be transformed into a $c$-closed graph…
Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…
We show NP-completeness for several planar variants of the monotone satisfiability problem with bounded variable appearances. With one exception the presented variants have an associated bipartite graph where the vertex degree is bounded by…
The maximum graph bisection problem is a well known graph partition problem. The problem has been proven to be NP-hard. In the maximum graph bisection problem it is required that the set of vertices is divided into two partition with equal…
There are many fundamental algorithmic problems on triangulated 3-manifolds whose complexities are unknown. Here we study the problem of finding a taut angle structure on a 3-manifold triangulation, whose existence has implications for both…
In this paper, we study a generalization of the classical minimum cut prob- lem, called Connectivity Preserving Minimum Cut (CPMC) problem, which seeks a minimum cut to separate a pair (or pairs) of source and destination nodes and…
An important application of distance geometry to biochemistry studies the embeddings of the vertices of a weighted graph in the three-dimensional Euclidean space such that the edge weights are equal to the Euclidean distances between…
In the classic Minimum Bisection problem we are given as input a graph $G$ and an integer $k$. The task is to determine whether there is a partition of $V(G)$ into two parts $A$ and $B$ such that $||A|-|B|| \leq 1$ and there are at most $k$…
Several computational problems in phylogenetic reconstruction can be formulated as restrictions of the following general problem: given a formula in conjunctive normal form where the literals are rooted triples, is there a rooted binary…
The feedback set problems are about removing the minimum number of vertices or edges from a graph to break all its cycles. Much effort has gone into understanding their complexity on planar graphs as well as on graphs of bounded degree. We…
A "genome structure" is a labeled directed graph with vertices of degree 1 or 2. A set of operations over such graphs is fixed, and each of the operations has a certain cost, a strictly positive number. The transformation problem consists…
We solve three enumerative problems concerning families of planar maps. More precisely, we establish algebraic equations for the generating function of non-separable triangulations in which all vertices have degree at least d, for a certain…
We consider the situation where one is given a set S of points in the plane and a collection D of unit disks embedded in the plane. We show that finding a minimum cardinality subset of D such that any path between any two points in S is…
We study the problem of finding a maximum-cardinality set of $r$-cliques in an undirected graph of fixed maximum degree $\Delta$, subject to the cliques in that set being either vertex-disjoint or edge-disjoint. It is known for $r=3$ that…
Interpreting three-leaf binary trees or {\em rooted triples} as constraints yields an entailment relation, whereby binary trees satisfying some rooted triples must also thus satisfy others, and thence a closure operator, which is known to…
A graph G is dually chordal if there is a spanning tree T of G such that any maximal clique of G induces a subtree in T. This paper investigates the Colourability problem on dually chordal graphs. It will show that it is NP-complete in case…