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A new computational scheme to analyze electron transfer (ET) pathways in large biomolecules is presented with applications to ETs in bacterial photosynthetic reaction center. It consists of a linear combination of fragment molecular…

Chemical Physics · Physics 2016-04-11 Hirotaka Kitoh-Nishioka , Koji Ando

We theoretically show that the initial coherence plays a crucial role in enhancing the speed of excitation energy transfer (EET) in Fenna-Matthews-Olson (FMO) complex. We choose a simplistic eight-level model considering all the…

Biological Physics · Physics 2017-09-25 Davinder Singh , Shubhrangshu Dasgupta

Ultrafast multistage electron transfer (ET) in molecular systems with multiple redox centers is fundamental to photochemical energy conversion, including processes in natural photosynthesis, molecular optoelectronics, and organic…

Chemical Physics · Physics 2025-07-29 Serguei Feskov , Anatoly Ivanov

The relaxation dynamics of correlated electron transport (ET) along molecular chains is studied based on a substantially improved numerically exact path integral Monte Carlo (PIMC) approach. As archetypical model we consider a Hubbard chain…

Statistical Mechanics · Physics 2009-11-11 L. Muehlbacher , J. Ankerhold , A. Komnik

FeS clusters are a universal biological motif. They carry out electron transfer, redox chemistry, and even oxygen sensing, in diverse processes including nitrogen fixation, respiration, and photosynthesis. The low-lying electronic states…

Chemical Physics · Physics 2015-06-22 Sandeep Sharma , Kantharuban Sivalingam , Frank Neese , Garnet Kin-Lic Chan

We present an analytic and numerical study of noise-assisted quantum exciton (electron) transfer (ET) in a bio-complex, consisting of an electron donor and acceptor (a dimer), modeled by interacting continuous electron bands of finite…

Biological Physics · Physics 2020-02-11 Alexander I. Nesterov , Gennady P. Berman , Marco Merkli , Avadh Saxena

Excitation energy transfer (EET) in an organic/inorganic nanohybrid system, composed of a single \textit{para}-sexiphenyl (6P) molecule physisorbed on a finite-sized MoS$_2$ nanoflake, is investigated theoretically. % The electronic…

Mesoscale and Nanoscale Physics · Physics 2026-01-22 Yan Meng , Kainan Chang , Luxia Wang

The Fenna-Matthews-Olson (FMO) complex - a pigment protein complex involved in photosynthesis in green sulfur bacteria - is remarkably efficient in transferring excitation energy from light harvesting antenna molecules to a reaction center.…

Quantum Physics · Physics 2016-10-20 Charlotta Bengtson , Michael Stenrup , Erik Sjöqvist

Excited state hydrogen transfer (ESHT) is responsible to various photochemical processes of aromatics including photoprotection of nuclear basis. Its mechanism is explained by the internal conversion from aromatic $\pi$$\pi$* to…

Atomic and Molecular Clusters · Physics 2017-12-06 Mitsuhiko Miyazaki , Ryuhei Ohara , Claude Dedonder , Christophe Jouvet , Masaaki Fujii

During the first steps of photosynthesis, the energy of impinging solar photons is transformed into electronic excitation energy of the light-harvesting biomolecular complexes. The subsequent energy transfer to the reaction center is…

Time-resolved Faradary rotation experiments have demonstrated coherent transfer of electron spin between CdSe colloidal quantum dots coupled by conjugated molecules. We employ here a Green's function approach, using semi-empirical…

Other Condensed Matter · Physics 2009-11-11 Joshua Schrier , K. Birgitta Whaley

The excitation energy transfer (EET) in Fenna-Matthews-Olson (FMO) complex has been investigated in the presence of realistic inhomogeneous protein environment around different bacteriochlorophyll-a (BChla) sites of a 8-site monomer. We…

Biological Physics · Physics 2018-05-17 Davinder Singh , Shubhrangshu Dasgupta

We study a simple quantum mechanical symmetric donor-acceptor model for electron transfer (ET) with coupling to internal deformations. The model contains several basic properties found in biological ET in enzymes and photosynthetic centers;…

Quantum Physics · Physics 2015-06-26 P. G. Etchegoin

We study theoretically the noise-assisted quantum exciton (electron) transfer (ET) in bio-complexes consisting of a single-level electron donor and an acceptor which has a complicated internal structure, and is modeled by many electron…

Biological Physics · Physics 2017-09-12 Shmuel Gurvitz , Alexander I. Nesterov , Gennady P. Berman

Electron transfer (ET) between primary electron donors and acceptors is modeled in the photosystem II reaction center (RC). Our model includes (i) two discrete energy levels associated with donor and acceptor, interacting through a…

We introduce the formalism to describe heavy-ion Double-Charge-Exchange (DCE) processes in the eikonal approximation. We focus on the low-momentum-transfer limit -- corresponding to the differential cross section at $\theta=0^\circ$ -- and,…

Nuclear Theory · Physics 2018-12-12 E. Santopinto , H. García-Tecocoatzi , R. I. Magaña-Vsevolodovna , J. Ferretti

This study investigates the potential impact of intramolecular excitations on the active regions of biomolecular chains, which may play a role in physiological processes within living cells. We assumed that an excitation localized in a…

Other Condensed Matter · Physics 2025-10-29 Dalibor Chevizovich , Slobodanka Galovic , Vasilije Matic , Zoran Ivic , Zeljko Przulj

We model the quantum electron transfer (ET) in the photosynthetic reaction center (RC), using a non-Hermitian Hamiltonian approach. Our model includes (i) two protein cofactors, donor and acceptor, with discrete energy levels and (ii) a…

Quantum Physics · Physics 2012-11-16 Alexander I. Nesterov , Gennady P. Berman , Alan R. Bishop

Fenna-Matthews-Olson (FMO) bacteriochlorophylls (BChls) are molecules responsible of the high efficiency energy transfer in the photosynthetic process of green sulfur bacteria, controversially associated to quantum phenomena of long lived…

Chemical Physics · Physics 2020-08-19 Bruno González-Soria , Francisco Delgado , Alan Anaya-Morales

Semiclassical electrodynamics is an appealing approach for studying light-matter interactions, especially for realistic molecular systems. However, there is no unique semiclassical scheme. On the one hand, intermolecular interactions can be…

Chemical Physics · Physics 2019-12-16 Tao E. Li , Hsing-Ta Chen , Abraham Nitzan , Joseph E. Subotnik
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