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Networks describing the interaction of the elements that constitute a complex system grow and develop via a number of different mechanisms, such as the addition and deletion of nodes, the addition and deletion of edges, as well as the…

Molecular Networks · Quantitative Biology 2010-06-09 Arend Hintze , Christoph Adami

The discourse surrounding the structural organization of mutualistic interactions mostly revolves around modularity and nestedness. The former is known to enhance the stability of communities, while the latter is related to their…

Physics and Society · Physics 2024-07-10 Aniello Lampo , María J. Palazzi , Javier Borge-Holthoefer , Albert Solé-Ribalta

In this work we give specific examples of competition models, with six and eight species, whose three-dimensional dynamics naturally leads to the formation of string networks with junctions, associated with regions that have a high…

Biological Physics · Physics 2017-02-17 P. P. Avelino , D. Bazeia , L. Losano , J. Menezes , B. F. de Oliveira

Although networks provide a powerful approach to study a large variety of ecological systems, their formulation does not typically account for multiple interaction types, interactions that vary in space and time, and interconnected systems…

Quantitative Methods · Quantitative Biology 2017-03-27 Shai Pilosof , Mason A. Porter , Mercedes Pascual , Sonia Kéfi

The self-protection of alliances against external invaders is a key concept behind the maintenance of biodiversity in the face of natural selection. But since these alliances, which can be formed by different numbers of competitors, can…

Populations and Evolution · Quantitative Biology 2022-12-07 Attila Szolnoki , Matjaz Perc

Systems with simultaneous cooperation and competition among the elements are ubiquitous. In spite of their practical importance, knowledge on the evolution mechanism of this class of complex system is still very limit. In this work, by…

Physics and Society · Physics 2015-05-20 Xiu-Lian Xu , Chun-Hua Fu , Hui Chang , Da-Ren He

Systems of dynamical interactions between competing species can be used to model many complex systems, and can be mathematically described by {\em random} networks. Understanding how patterns of activity arise in such systems is important…

Adaptation and Self-Organizing Systems · Physics 2016-01-21 Nick McCullen , Thomas Wagenknecht

Ecological networks exhibit non-random structural patterns, such as modularity and nestedness, which indicate ecosystem stability, species diversity, and connectance. Such structure-stability relationships are well known. However, another…

Populations and Evolution · Quantitative Biology 2014-06-12 Kazuhiro Takemoto , Saori Kanamaru , Wenfeng Feng

Complex systems are characterized by many interacting units that give rise to emergent behavior. A particularly advantageous way to study these systems is through the analysis of the networks that encode the interactions among the system's…

Physics and Society · Physics 2019-03-21 Alberto Aleta , Yamir Moreno

We study the effect of learning dynamics on network topology. A network of discrete dynamical systems is considered for this purpose and the coupling strengths are made to evolve according to a temporal learning rule that is based on the…

Chaotic Dynamics · Physics 2009-11-13 Juergen Jost , Kiran M. Kolwankar

Natural selection and random drift are competing phenomena for explaining the evolution of populations. Combining a highly fit mutant with a population structure that improves the odds that the mutant spreads through the whole population…

Populations and Evolution · Quantitative Biology 2009-08-14 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Understanding the origins of complexity is a fundamental challenge with implications for biological and technological systems. Network theory emerges as a powerful tool to model complex systems. Networks are an intuitive framework to…

Disordered Systems and Neural Networks · Physics 2024-10-22 Blai Vidiella , Salva Duran-Nebreda , Sergi Valverde

We suggest a novel approach to treating symbiotic relations between biological species or social entities. The main idea is the characterisation of symbiotic relations of coexisting species through their mutual influence on their respective…

Populations and Evolution · Quantitative Biology 2015-06-22 V. I. Yukalov , E. P. Yukalova , D. Sornette

Competitive exclusion, a key principle of ecology, can be generalized to understand many other complex systems. Individuals under surviving pressure tend to be different from others, and correlations among them change correspondingly to the…

Data Analysis, Statistics and Probability · Physics 2008-02-14 Chen-Ping Zhu , Tao Zhou , Hui-Jie Yang , Shi-Jie Xiong , Zhi-Ming Gu , Da-Ning Shi , Da-Ren He , Bing-Hong Wang

The rate at which nodes in a network increase their connectivity depends on their fitness to compete for links. For example, in social networks some individuals acquire more social links than others, or on the www some webpages attract…

Disordered Systems and Neural Networks · Physics 2007-05-23 G. Bianconi A. -L. Barabási

The assembly and persistence of ecological communities can be understood as the result of the interaction and migration of species. Here we study a single community subject to migration from a species pool in which inter-specific…

Populations and Evolution · Quantitative Biology 2023-07-27 Matthew Dopson , Clive Emary

The distributions of species lifetimes and species in space are related, since species with good local survival chances have more time to colonize new habitats and species inhabiting large areas have higher chances to survive local…

Populations and Evolution · Quantitative Biology 2019-02-18 Tobias Rogge , David Jones , Barbara Drossel , Korinna T. Allhoff

The persistence of biodiversity of species is a challenging proposition in ecological communities in the face of Darwinian selection. The present article investigates beyond the pairwise competitive interactions and provides a novel…

Populations and Evolution · Quantitative Biology 2022-11-09 Sourin Chatterjee , Sayantan Nag Chowdhury , Dibakar Ghosh , Chittaranjan Hens

We present a model that takes into account the coupling between evolutionary game dynamics and social influence. Importantly, social influence and game dynamics take place in different domains, which we model as different layers of a…

Physics and Society · Physics 2017-02-22 Roberta Amato , Albert Díaz-Guilera , Kaj-Kolja Kleineberg

This paper is to analyze the properties of evolving bipartite networks from four aspects, the growth of networks, the degree distribution, the popularity of objects and the diversity of user behaviours, leading a deep understanding on the…

Physics and Society · Physics 2015-10-29 Xin-Yi Lu , Jian-Hong Lin , Qiang Guo , Jian-Guo Liu
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