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A mutualism is an interaction where the involved species benefit from each other. We study a two-dimensional hexagonal three-state cellular automaton model of a two-species mutualistic system. The simple model is characterized by four…

Cellular Automata and Lattice Gases · Physics 2010-11-23 Andrew Adamatzky , Martin Grube

We consider the concept of mutual information in ecological networks, and use this idea to analyse the Tangled Nature model of co-evolution. We show that this measure of correlation has two distinct behaviours depending on how we define the…

Populations and Evolution · Quantitative Biology 2009-11-02 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

Global environmental change is affecting species distribution and their interactions with other species. In particular, the main drivers of environmental change strongly affect the strength of interspecific interactions with considerable…

Populations and Evolution · Quantitative Biology 2013-08-19 Serguei Saavedra , Rudolf P. Rohr , Vasilis Dakos , Jordi Bascompte

Biomolecular networks have already found great utility in characterizing complex biological systems arising from pair-wise interactions amongst biomolecules. Here, we review how graph theoretical approaches can be applied not only for a…

Molecular Networks · Quantitative Biology 2018-12-03 Heeralal Janwa , Steven E. Massey , Julian Velev , Bud Mishra

We model a social-encounter network where linked nodes match for reproduction in a manner depending probabilistically on each node`s attractiveness. The developed model reveals that increasing either the network`s mean degree or the…

Physics and Society · Physics 2017-06-22 S. Dipple , T. Jia , T. Caraco , G. Korniss , B. K. Szymanski

A bipartite producer-consumer network is constructed to describe the industrial structure. The edges from consumer to producer represent the choices of the consumer for the final products and the degree of producer can represent its market…

Physics and Society · Physics 2009-11-11 Wang Dahui , Zhou Li , Di Zengru

Contemporary Niche Theory is a useful framework for understanding how organisms interact with each other and with their shared environment. Its graphical representation, popularized by Tilman's Resource Ratio Hypothesis, facilitates the…

Populations and Evolution · Quantitative Biology 2020-07-10 Fernanda S. Valdovinos , Robert Marsland

The far-reaching consequences of ecological interactions in the dynamics of biological communities remain an intriguing subject. For decades, competition has been a cornerstone in ecological processes, but mounting evidence shows that…

Populations and Evolution · Quantitative Biology 2021-07-19 F. Meloni , G. Nakamura , B. Grammaticos , A. S. Martinez , M. Badoual

The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

In social networks, it is conventionally thought that two individuals with more overlapped friends tend to establish a new friendship, which could be stated as homophily breeding new connections. While the recent hypothesis of maximum…

Social and Information Networks · Computer Science 2016-02-17 Jichang Zhao , Xiao Liang , Ke Xu

We study the evolution of the network properties of a populated network embedded in a genotype space characterised by either a low or a high number of potential links, with particular emphasis on the connectivity and clustering. Evolution…

Statistical Mechanics · Physics 2007-05-23 Paul Anderson , Henrik Jeldtoft Jensen

We study the evolution of cooperation in the prisoner's dilemma game, whereby a coevolutionary rule is introduced that molds the random topology of the interaction network in two ways. First, existing links are deleted whenever a player…

Physics and Society · Physics 2009-09-25 Attila Szolnoki , Matjaz Perc

We investigate the relationship between the nested organization of mutualistic systems and their robustness against the extinction of species. We establish that a nested pattern of contacts is the best possible one as far as robustness is…

Populations and Evolution · Quantitative Biology 2007-09-20 E. Burgos , H. Ceva , R. Perazzo , M. Devoto , D. Medan , M. Zimmermann , A. M. Delbue

Within the last fifteen years, network theory has been successfully applied both to natural sciences and to socioeconomic disciplines. In particular, bipartite networks have been recognized to provide a particularly insightful…

Physics and Society · Physics 2015-12-07 Fabio Saracco , Riccardo Di Clemente , Andrea Gabrielli , Tiziano Squartini

Many empirical networks are intrinsically pluralistic, with interactions occurring within groups of arbitrary agents. Then the agent in the network can be influenced by types of neighbors, common examples include similarity, opposition, and…

Physics and Society · Physics 2020-05-12 Shuo Liu , Xiwang Guan , Shuangling Luo , Haoxiang Xia

Platforms often host multiple online groups with overlapping topics and members. How can researchers and designers understand how related groups affect each other? Inspired by population ecology, prior research in social computing and…

Human-Computer Interaction · Computer Science 2024-12-10 Nathan TeBlunthuis , Benjamin Mako Hill

The assembly of ecological communities from a pool of species is central to ecology, but the effect of this process on properties of community interaction networks is still largely unknown. Here, we use a systematic analytical framework to…

Populations and Evolution · Quantitative Biology 2016-07-19 Guy Bunin

Social network structures play an important role in the lives of animals by affecting individual fitness and the spread of disease and information. Nevertheless, we still lack a good understanding of how these structures emerge from the…

Physics and Society · Physics 2026-02-16 Josefine Bohr Brask , Andreas Koher , Darren P. Croft , Sune Lehmann

James et al. (2012) presented simulations that apparently falsify the analytical result by Bastolla et al. (2009), who showed that nested mutualistic interactions decrease interspecific competition and increase biodiversity in model…

Populations and Evolution · Quantitative Biology 2013-01-17 Rudolf P. Rohr , Miguel A. Fortuna , Bartolo Luque , Jordi Bascompte

Most previous works study the evolution of cooperation in a structured population by commonly employing an isolated single network. However, realistic systems are composed of many interdependent networks coupled with each other, rather than…

Physics and Society · Physics 2015-06-11 Baokui Wang , Xiaojie Chen , Long Wang