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Nanoscale biosystems are widely used in numerous medical applications. The approaches for structure and function of the nanomachines that are available in the cell (natural nanomachines) are discussed. Molecular simulation studies have been…

Biological Physics · Physics 2016-09-08 Babu A Manjasetty , T. R. Gopalakrishnan Nair , Y. S. Ramaswamy

Microtubules (MTs) are important cytoskeletal structures, engaged in a number of specific cellular activities, including vesicular traffic, cell cyto-architecture and motility, cell division, and information processing within neuronal…

Subcellular Processes · Quantitative Biology 2007-05-23 Avner Priel , Arnolt J. Ramos , Jack A. Tuszynski , Horacio F. Cantiello

A common issue faced by magnetic particle-based Lab-on-a-chip systems, e.g, for medical diagnostics, is the intrinsic fabrication-related polydispersity in particle sizes and magnetic properties. Therefore, to reduce this variation, it is…

Applied Physics · Physics 2026-02-16 Rico Huhnstock , Lukas Paetzold , Piotr Kuswik , Arno Ehresmann

Soft elastic composite materials containing particulate rigid inclusions in a soft elastic matrix are candidates for developing soft actuators or tunable damping devices. The possibility to reversibly drive the rigid inclusions within such…

Metamaterials are structures composed of repeating unit-cells which enable macro-scale properties not found in nature. Since metamaterials are typically solid structures with predetermined interconnections, it is challenging to leverage…

Fluid Dynamics · Physics 2025-12-10 Ezra Ben-Abu , Anna Zigelman , Sefi Givli , Amir D. Gat

Magnetic ordering in two-dimensional (2D) materials has recently emerged as a promising platform for data storage, computing, and sensing. To advance these developments, it is vital to gain a detailed understanding of how the magnetic order…

A mesoscopic coarse-grain model for computationally-efficient simulations of biomembranes is presented. It combines molecular dynamics simulations for the lipids, modeled as elastic chains of beads, with multiparticle collision dynamics for…

Soft Condensed Matter · Physics 2015-06-04 Mu-Jie Huang , Raymond Kapral , Alexander S. Mikhailov , Hsuan-Yi Chen

Star polymers with magnetically functionalized end groups are presented as a novel polymeric system whose morphology, self-aggregation, and orientation can easily be tuned by exposing these macromolecules simultaneously to an external…

Soft Condensed Matter · Physics 2019-04-03 David Toneian , Christos N. Likos , Gerhard Kahl

The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls or other structures. We examine here a microtubule growth model where the increase in size of the plus-end is perturbed by collisions with…

Soft Condensed Matter · Physics 2010-09-29 Vladimir A. Baulin , Carlos M. Marques , Fabrice Thalmann

Tumor metastasis, traditionally considered as random spreading of individual cancer cells, has been shown to also involve coordinated collective invasion in the tissue space. Here we demonstrate experimentally and computationally that…

Biological Physics · Physics 2019-04-05 Jihan Kim , Yu Zheng , Amani A. Alobaidi , Hanqing Nan , Jianxiang Tian , Yang Jiao , Bo Sun

A sperm-driven micromotor is presented as cargo-delivery system for the treatment of gynecological cancers. This particular hybrid micromotor is appealing to treat diseases in the female reproductive tract, the physiological environment…

The possibility to guide and control magnetic nanoparticles in a non-invasive manner has spawned various applications in biotechnology such as targeted drug delivery and sensing of biological substances. These applications are facilitated…

Emerging Technologies · Computer Science 2019-02-05 Wayan Wicke , Arman Ahmadzadeh , Vahid Jamali , Harald Unterweger , Christoph Alexiou , Robert Schober

Originating from image recognition, methods of machine learning allow for effective feature extraction and dimensionality reduction in multidimensional datasets, thereby providing an extraordinary tool to deal with classical and quantum…

Statistical Mechanics · Physics 2019-01-16 Albert A. Shirinyan , Valerii K. Kozin , Johan Hellsvik , Manuel Pereiro , Olle Eriksson , Dmitry Yudin

The present work presents a density-functional microscopic model of soft biological tissue. The model was based on a prototype molecular structure from experimentally resolved collagen peptide residues and water clusters and has the…

Soft Condensed Matter · Physics 2014-04-15 E. T. Sato , A. R. Rocha , L. F. C. S. Carvalho , J. D. Almeida , H. Martinho

In a mathematical model of interacting biological organisms, where external interventions may alter behavior over time, traditional models that assume fixed parameters usually do not capture the evolving dynamics. In oncology, this is…

Machine Learning · Computer Science 2025-12-18 Kayode Olumoyin , Lamees El Naqa , Katarzyna Rejniak

Micromagnetic simulation results on dynamic hysteresis loops of clusters of iron oxide nanoparticles (NPs) with internal structure composed of nanorods are compared with the widely used macrospin approximation. Such calculations allowing…

Materials Science · Physics 2022-09-02 Razyeh Behbahani , Martin L. Plumer , Ivan Saika-Voivod

Micromotors pushed by biological entities, like motile bacteria, constitute a fascinating way to convert chemical energy into mechanical work at the micrometer scale. Here we show, by using numerical simulations, that a properly designed…

Soft Condensed Matter · Physics 2009-11-13 Luca Angelani , Roberto Di Leonardo , Giancarlo Ruocco

In this paper, we investigate the Internet of Bio-Nano Things (IoBNT) which relates to networks formed by molecular communications. By providing a means of communication through the ubiquitously connected blood vessels (arteries, veins, and…

Emerging Technologies · Computer Science 2025-09-24 Changmin Lee , Bon-Hong Koo , Chan-Byoung Chae , Robert Schober

Tiny cilia drive the flow of surrounding fluids through asymmetric jumping, which is one of the main ways for biological organisms to control fluid transport at the micro-scale. Due to its huge application prospects in medical and…

Optimization and Control · Mathematics 2024-01-08 Shuangshuang Yu , Zheng Ning , Ge Chen

Iron oxide (e.g., Fe$_3$O$_4$ or Fe$_2$O$_3$) nanoparticles are promising candidates for a variety of biomedical applications ranging from magnetic hyperthermia therapy to drug delivery and bio-detection, due to their superparamagnetism,…