Related papers: A note on Pr\"ufer-like coding and counting forest…
For fixed $t\ge 2$, we consider the class of representations of $1$ as sum of unit fractions whose denominators are powers of $t$ or equivalently the class of canonical compact $t$-ary Huffman codes or equivalently rooted $t$-ary plane…
LRM-Trees are an elegant way to partition a sequence of values into sorted consecutive blocks, and to express the relative position of the first element of each block within a previous block. They were used to encode ordinal trees and to…
Let $T$ be a weighted tree. The weight of a subtree $T_1$ of $T$ is defined as the product of weights of vertices and edges of $T_1$. We obtain a linear-time algorithm to count the sum of weights of subtrees of $T$. As applications, we…
In 1986, Janson showed that the number of edges in the union of $k$ random spanning trees in the complete graph $K_n$ is a shifted Poisson distribution. Using results from the theory of electrical networks, we provide a new proof of this…
Can we do arithmetic in a completely different way, with a radically different data structure? Could this approach provide practical benefits, like operations on giant numbers while having an average performance similar to traditional…
An important and well-studied problem in phylogenetics is to compute a \emph{consensus tree} so as to summarize the common features within a collection of rooted phylogenetic trees, all whose leaf-sets are bijectively labeled by the same…
Computational predictions of mass spectra from molecules have enabled the discovery of clinically relevant metabolites. However, such predictive tools are still limited as they occupy one of two extremes, either operating (a) by fragmenting…
We consider the counting problem of the number of \textit{leaf-labeled increasing trees}, where internal nodes may have an arbitrary number of descendants. The set of all such trees is a discrete representation of the genealogies obtained…
Phylogenetic networks are leaf-labelled directed acyclic graphs that are used to describe non-treelike evolutionary histories and are thus a generalization of phylogenetic trees. The hybridization number of a phylogenetic network is the sum…
The classes of tree permutations and forest permutations were defined by Acan and Hitczenko (2016). We study random permutations of a given length from these classes, and in particular the number of occurrences of a fixed pattern in one of…
Graph encoders in AMR-to-text generation models often rely on neighborhood convolutions or global vertex attention. While these approaches apply to general graphs, AMRs may be amenable to encoders that target their tree-like structure. By…
A random forest prediction can be computed by the scalar product of the labels of the training examples and a set of weights that are determined by the leafs of the forest into which the test object falls; each prediction can hence be…
For a poset whose Hasse diagram is a rooted plane forest $F$, we consider the corresponding tree descent polynomial $A_F(q)$, which is a generating function of the number of descents of the labelings of $F$. When the forest is a path,…
We define a new family of generalized Stirling permutations that can be interpreted in terms of ordered trees and forests. We prove that the number of generalized Stirling permutations with a fixed number of ascents is given by a natural…
Regular tree grammars and regular path expressions constitute core constructs widely used in programming languages and type systems. Nevertheless, there has been little research so far on frameworks for reasoning about path expressions…
We prove the rather counterintuitive result that there exist finite transitive graphs H and integers k such that the Free Uniform Spanning Forest in the direct product of the k-regular tree and H has infinitely many trees almost surely.…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
Inspired by [4] we present a new algorithm for uniformly random generation of ordered trees in which all occuring outdegrees can be specified by a given sequence of numbers. The method can be used for random generation of binary or n-ary…
Given two strings $T$ and $S$ and a set of strings $P$, for each string $p \in P$, consider the unique substrings of $T$ that have $p$ as their prefix and $S$ as their suffix. Two problems then come to mind; the first problem being the…
We are interested in random uniform minimal factorizations of the $n$-cycle which are factorizations of $(1~2\dots n)$ into a product of $n-1$ transpositions. Our main result is an explicit formula for the joint probability that 1 and 2…