Related papers: A note on Pr\"ufer-like coding and counting forest…
We obtain a generating function for the degree sequences and colors of rooted multipartite labeled series-reduced trees. As an application of this result, we determine the number of symbolic ultrametrics (introduced by B\"ocker and Dress)…
Billey et al. [arXiv:1507.04976] have recently discovered a surprisingly simple formula for the number $a_n(\sigma)$ of leaf-labelled rooted non-embedded binary trees (also known as phylogenetic trees) with $n\geq 1$ leaves, fixed (for the…
A closed-form formula is derived for the number of occurrences of matches of a multiset of patterns among all ordered (plane-planted) trees with a given number of edges. A pattern looks like a tree, with internal nodes and leaves, but also…
In the context of reconstructing phylogenetic networks from a collection of phylogenetic trees, several characterisations and subsequently algorithms have been established to reconstruct a phylogenetic network that collectively embeds all…
In this paper, we are interested in the number of red nodes in red-black trees. We first present an $O(n^2\log n)$ time dynamic programming solution for computing $r(n)$, the largest number of red internal nodes in a red-black tree on $n$…
In this paper, we give a simple combinatorial explanation of a formula of A. Postnikov relating bicolored rooted trees to bicolored binary trees. We also present generalized formulas for the number of labeled k-ary trees, rooted labeled…
In biology, a phylogenetic tree is a tool to represent the evolutionary relationship between species. Unfortunately, the classical Schr\"oder tree model is not adapted to take into account the chronology between the branching nodes. In…
In this paper, we present an exact algorithm for the Steiner tree problem. The algorithm is based on certain pre-computed index structures. Our algorithm offers a practical solution for the Steiner tree problems on graphs of large size and…
We consider unimodular random rooted trees (URTs) and invariant forests in Cayley graphs. We show that URTs of bounded degree are the same as the law of the component of the root in an invariant percolation on a regular tree. We use this to…
The sequence A120986 in the Encyclopedia of Integer Sequences counts ternary trees according to the number of nodes and the number of middle edges. Using a certain substition, the underlying cubic equation can be factored. This leads to an…
Rooted bifurcating trees are mathematical objects used to model evolutionary relationships and arise naturally in both coalescent theory and phylogenetics. Recent numerical representations of tree topologies, known as F-matrices, allow for…
We give two combinatorial proofs of an elegant product formula for the number of spanning trees of the $n$-dimensional hypercube. The first proof is based on the assertion that if one chooses a uniformly random rooted spanning tree of the…
Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…
Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…
We define some new sequences of recursively constructed random combinatorial trees, and show that, after properly rescaling graph distance and equipping the trees with the uniform measure on vertices, each sequence converges almost surely…
e use Prolog as a flexible meta-language to provide executable specifications of some fundamental mathematical objects and their transformations. In the process, isomorphisms are unraveled between natural numbers and combinatorial objects…
A bi-Cayley graph over the cyclic group $(\mathbb{Z}_n, +)$ is called a bicirculant graph. Let $\Gamma=BC(\mathbb{Z}_n; R,T,S)$ be a bicirculant graph with $R=-R\subseteq \mathbb{Z}_n\setminus \{0\}$ and $T={-}T\subseteq…
We address unsupervised discontinuous constituency parsing, where we observe a high variance in the performance of the only previous model in the literature. We propose to build an ensemble of different runs of the existing discontinuous…
The purpose of this paper is to analyze certain statistics of a recently introduced non-uniform random tree model, biased recursive trees. This model is based on constructing a random tree by establishing a correspondence with non-uniform…
We give a formula for counting tree modules for the quiver S_g with g loops and one vertex in terms of tree modules on its universal cover. This formula, along with work of Helleloid and Rodriguez-Villegas, is used to show that the number…