Related papers: Confinement of semiflexible polymers
Gluodynamics in 3D spacetime with one spatial direction compactified into a circle of length $L$ is studied. The confinement order parameters, such as the Polyakov loops, are analyzed in both the limits $L \to 0$ and $L \to \infty$. In the…
Loops undergoing thermal fluctuations are prevalent in nature. Ring-like or cross-linked polymers, cyclic macromolecules, and protein-mediated DNA loops all belong to this category. Stability of these molecules are generally described in…
Extended Gross-Pitaevskii equations for the rotating F=2 condensate in a harmonic trap are solved both numerically and variationally using trial functions for each component of the wave function. Axially-symmetric vortex solutions are…
The dynamics of an active walker in a harmonic potential is studied experimentally, numerically and theoretically. At odds with usual models of self-propelled particles, we identify two dynamical states for which the particle condensates at…
Monte Carlo simulations are used to study the conformational properties of a folded semiflexible polymer confined to a long channel. We measure the variation in the conformational free energy with respect to the end-to-end distance of the…
Dynamics of regular clusters of many non-touching particles falling under gravity in a viscous fluid at low Reynolds number are analysed within the point-particle model. Evolution of two families of particle configurations is determined: 2…
Integrable systems possess stable families of quasiparticles, which are composite objects (bound states) of elementary excitations. Motivated by recent quantum computer experiments, we investigate bound-state transport in the spin-$1/2$…
We consider an inextensible, semiflexible polymer or worm-like chain, with persistence length $P$ and contour length $L$, fluctuating in a cylindrical channel of diameter $D$. In the regime $D\ll P\ll L$, corresponding to a long, tightly…
We study the behaviour of circular flexible loops sedimenting in a viscous fluid by numerical simulations and linear stability analysis. The numerical model involves a local slender-body theory approximation for the flow coupled to the…
We study by Monte Carlo simulations and scaling analysis two models of pairs of confined and dense ring polymers in two dimensions. The pair of ring polymers are modelled by squared lattice polygons confined within a square cavity and they…
The conformational properties of flexible and semiflexible polymers exposed to active noise are studied theoretically. The noise may originate from the interaction of the polymer with surround- ing active (Brownian) particles or from the…
In the curved spacetime background, the trajectory of a spinning test particle will deviate from the geodesic. Using the effective potential method, we study the motion of a spinning test particle on the equatorial plane of a polymer black…
We investigate the conformational and dynamical properties of a partially active Rouse chain, where activity is localized within a specific segment, positioned at various locations along the chain and spanning any given length. Through…
The conformational and dynamical properties of isolated semiflexible active polar ring polymers are investigated analytically. A ring is modeled as continuous Gaussian polymer exposed to tangential active forces. The analytical solution of…
We examine the spectrum of small perturbations around global and local (gauge) abelian vortices, using simple numerical matrix techniques. The results are of interest for both cosmic strings and for their condensed matter analogues,…
We study a model of a semiflexible long chain polymer confined to a two-dimensional slit of width $w$, and interacting with the walls of the slit. The interactions with the walls are controlled by Boltzmann weights $a$ and $b$, and the…
Topological constraints can affect both equilibrium and dynamic properties of polymer systems, and can play a role in the organization of chromosomes. Despite many theoretical studies, the effects of topological constraints on the…
Solutions of semiflexible polymers confined by repulsive planar walls are studied by density functional theory and Molecular Dynamics simulations, to clarify the competition between the chain alignment favored by the wall and the depletion…
We have explored isotropically jammed states of semi-2D granular materials through cyclic compression. In each compression cycle, systems of either identical ellipses or bi-disperse disks, transition between jammed and unjammed states. We…
We report results of systematic analysis of confined steadily rotating patterns in the two-component BEC including the spin-orbit coupling (SOC) of the Rashba type, which acts in the interplay with the attractive or repulsive…