Related papers: Simple lattice model for biological gels
We present a model for disordered 3D fiber networks to study their linear and nonlinear elasticity over a wide range of network densities and fiber lengths. In contrast to previous 2D models, these 3D networks with binary cross-links are…
Recent experimental investigations have revealed a non-Maxwellian absorption pattern in the rheological spectra of actin gels, which was interpreted in terms of transient bonds. Here we examine the consequences of reversible crosslinking on…
We study the equilibrium and nonequilibrium formation of four-particle complexes in a balanced two-species Bose-Hubbard model with repulsive intra- and attractive inter-species interactions. Using exact diagonalization, we characterize the…
We present a generic and systematic approach for constructing D-dimensional lattice models with exactly solvable d-dimensional boundary states localized to corners, edges, hinges and surfaces. These solvable models represent a class of…
Active gels made of cytoskeletal proteins are valuable materials with attractive non-equilibrium properties such as spatial self-organization and self-propulsion. At least four typical routes to spatial patterning have been reported to date…
Most biological fluids are viscoelastic, meaning that they have elastic properties in addition to the dissipative properties found in Newtonian fluids. Computational models can help us understand viscoelastic flow, but are often limited in…
We study the model of a partially directed flexible or semi-flexible homopolymer on a square lattice, subject to an externally applied force, in a direction either parallel to, or perpendicular to the preferred direction. The polymer is…
Model off-lattice sequences in two dimensions are constructed so that their native states are close to an on-lattice target. The Hamiltonian involves the Lennard-Jones and harmonic interactions. The native states of these sequences are…
Biopolymer gels such as fibrin and collagen networks are known to develop tensile axial stress when subject to torsion. This negative normal stress is opposite to the classical Poynting effect observed for most elastic solids including…
A lattice Boltzmann model for amphiphilic fluid dynamics is presented. It is a ternary model, in that it conserves mass separately for each chemical species present (water, oil, amphiphile), and it maintains an orientational degree of…
Networks of filamentous proteins play a crucial role in cell mechanics. These cytoskeletal networks, together with various crosslinking and other associated proteins largely determine the (visco)elastic response of cells. In this letter we…
An analytically solvable model of unsaturated lipid bilayer is derived by introducing finite bending angle of the unsaturated bond relative to straight part of the lipid chain considered previously in our model of semi-flexible strings. It…
Live cells have ambiguous mechanical properties. They were often described as either elastic solids or viscoelastic fluids and have recently been classified as soft glassy materials characterized by weak power-law rheology. Nonlinear…
We introduce lattice models with explicit N=2 supersymmetry. In these interacting models, the supersymmetry generators Q^+ and Q^- yield the Hamiltonian H={Q^+,Q^-} on any graph. The degrees of freedom can be described as either fermions…
Glass-forming liquids have been extensively studied in recent decades, but there is still no theory that fully describes these systems, and the diversity of treatments is in itself a barrier to understanding. Here we introduce a new simple…
We find the exact solution of three interacting friendly directed walks on the square lattice in the bulk, modelling a system of homopolymers that can undergo gelation by introducing two distinct interaction parameters that differentiate…
We propose a lattice model for the realization of exotic quartic semi-Dirac fermions, i.e. quasiparticles exhibiting a dispersion with quartic momentum dependence in a given direction, and a linear dependence in the perpendicular direction.…
Peritrichous bacteria swim in viscous fluids by rotating multiple helical flagellar filaments. As the bacterium swims forward, all its flagella rotate in synchrony behind the cell in a helical bundle. When the bacterium changes its…
The kinetic behavior of a three-dimensional off-lattice heteropolymer model is studied in terms of the time dependence of the average mean-square displacement between configurations. It is found that at short time-scales similar behavior is…
Liquid crystal elastomers (LCEs) are rubber-like solids that incorporate nematic mesogens (stiff rod-like molecules) as a part of their polymer chains. In recent years, isotropic-genesis, polydomain liquid crystal elastomers (I-PLCEs) has…