Related papers: Simple lattice model for biological gels
We study analytically and numerically a generic continuum model of an isotropic active solid with internal stresses generated by non-equilibrium `active' mechano-chemical reactions. Our analysis shows that the gel can be tuned through three…
We introduce a three-dimensional model for polyelectrolyte hydrogel filaments operating in a fluid environment under an electric field. The formulation builds on a morphoelastic framework for inextensible and unshearable rods, such that the…
We study a model for the gel degradation by an enzyme, where the gel is schematized as a cubic lattice, and the enzyme as a random walker, that cuts the bonds over which it passes. The model undergoes a (reverse) percolation transition,…
In the dilute limit, the properties of fermionic lattice models with short-range attractive interactions converge to those of a dilute Fermi gas in continuum space. We investigate this connection using mean-field and we show that the…
By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…
We study a harmonic triangular lattice, which relaxes in the presence of a weak, short-wavelength periodic potential. Monte Carlo simulations reveal that the elastic lattice has only short-ranged positional correlations, despite the absence…
We introduce a system where an elastic lattice of particles is moved slowly at a constant velocity under the influence of a local external potential, construct a rigid-body model through simplification processes, and show that the two…
Magnetic fluids are colloidal suspensions of ferromagnetic particles covered with a surfactant layer, dispersed in a host liquid. The existence of cooperative phenomena in such magnetic colloidal systems, makes the determining of their…
We consider ultracold atoms in a two-dimensional optical lattice of the dice geometry in a tight-binding regime. The atoms experience a laser-assisted tunneling between the nearest neighbour sites of the dice lattice accompanied by the…
Bacterial colonies can form a wide variety of shapes and structures based on ambient and internal conditions. To help understand the mechanisms that determine the structure of and the diversity within these colonies, various numerical…
A lattice-based model for continuum percolation is applied to the case of randomly located, partially aligned sticks with unequal lengths in 2D which are allowed to cross each other. Results are obtained for the critical number of sticks…
A multi-component lattice Boltzmann model recently introduced (R. Benzi et al. Phys. Rev. Lett 102, 026002 (2009)) to describe some dynamical behaviors of soft-flowing materials is theoretically analyzed. Equilibrium and transport…
We consider the three-dimensional (3D) mean-field model for the Bose-Einstein condensate (BEC), with a 1D nonlinear lattice (NL), which periodically changes the sign of the nonlinearity along the axial direction, and the harmonic-oscillator…
Vertex Models, as used to describe cellular tissue, have an energy controlled by deviations of each cell area and perimeter from target values. The constrained nonlinear relation between area and perimeter leads to new mechanical response.…
The lattice Boltzmann method has become a standard technique for simulating a wide range of fluid flows. However, the intrinsic coupling of momentum and space discretization restricts the traditional lattice Boltzmann method to regular…
We study a lattice model with two body interactions that reproduces in three-dimensions many features of structural glasses, like cage effect and vanishing diffusivity. While having a crystalline state at low temperatures, it does not…
We devise a generic recipe for constructing $D$-dimensional lattice models whose $d$-dimensional boundary states, located on surfaces, hinges, corners, and so forth, can be obtained exactly. The solvability is rooted in the underlying…
A two-dimensional bistable lattice is a periodic triangular network of non-linear bi-stable rods. The energy of each rod is piecewise quadratic and has two minima. Consequently, a rod undergoes a reversible phase transition when its…
Molecular dynamics simulations have been employed to study the formation of a physical (thermoreversible) gel by amphiphilic A-B-A triblock copolymers in aqueous solution. In order to mimic the structure of hydrogel-forming polypeptides…
We propose a lattice model, in both one- and multidimensional versions, which may give rise to matching conditions necessary for the generation of solitons through the second-harmonic generation. The model describes an array of linearly…