Related papers: Constructing minimal phylogenetic networks from so…
Statistical significance of network clustering has been an unresolved problem since it was observed that community detection algorithms produce false positives even in random graphs. After a phase transition between undetectable and…
We present a general method for converting any family of unsatisfiable CNF formulas that is hard for one of the simplest proof systems, tree resolution, into formulas that require large rank in any proof system that manipulates polynomials…
We propose a method to make a highly clustered complex network within the configuration model. Using this method, we generated highly clustered random regular networks and analyzed the properties of them. We show that highly clustered…
Machine learning has become a central research area, with increasing attention devoted to explainable clustering, also known as conceptual clustering, which is a knowledge-driven unsupervised learning paradigm that partitions data into…
In $K$-means classification, a set of data will form clusters, i.e. classes, if the measured distances between data points (or some common point in each class) are below a certain threshold. With the assumption that the data points are…
Triadic closure, the formation of a connection between two nodes in a network sharing a common neighbor, is considered a fundamental mechanism determining the clustered nature of many real-world topologies. In this work we define a static…
A rooted phylogenetic network is a directed acyclic graph with a single root, whose sinks correspond to a set of species. As such networks are useful for representing the evolution of species that have undergone reticulate evolution, there…
A communicating system is $k$-synchronizable if all of the message sequence charts representing the executions can be divided into slices of $k$ sends followed by $k$ receptions. It was previously shown that, for a fixed given $k$, one…
We prove that finding a $k$-edge induced subgraph is fixed-parameter tractable, thereby answering an open problem of Leizhen Cai. Our algorithm is based on several combinatorial observations, Gauss' famous \emph{Eureka} theorem [Andrews,…
This paper proves a new general K-network constrained energy reliability global factorization theorem. As in the unconstrained case, beside its theoretical mathematical importance the theorem shows how to do parallel processing in exact…
We study the behavior of network diffusions based on the PageRank random walk from a set of seed nodes. These diffusions are known to reveal small, localized clusters (or communities) and also large macro-scale clusters by varying a…
We investigate the problem of constructing fault-tolerant bases in matroids. Given a matroid M and a redundancy parameter k, a k-fault-tolerant basis is a minimum-size set of elements such that, even after the removal of any k elements, the…
Many problems in static program analysis can be modeled as the context-free language (CFL) reachability problem on directed labeled graphs. The CFL reachability problem can be generally solved in time $O(n^3)$, where $n$ is the number of…
Analyzing relational data consisting of multiple samples or layers involves critical challenges: How many networks are required to capture the variety of structures in the data? And what are the structures of these representative networks?…
We call an Ising model tractable when it is possible to compute its partition function value (statistical inference) in polynomial time. The tractability also implies an ability to sample configurations of this model in polynomial time. The…
Here we show that deciding whether two rooted binary phylogenetic trees on the same set of taxa permit a cherry-picking sequence, a special type of elimination order on the taxa, is NP-complete. This improves on an earlier result which…
Phylogenetic networks are an extension of phylogenetic trees that allow for the representation of reticulate evolution events. One of the classes of networks that has gained the attention of the scientific community over the last years is…
We study the problem of finding a temporal hybridization network for a set of phylogenetic trees that minimizes the number of reticulations. First, we introduce an FPT algorithm for this problem on an arbitrary set of $m$ binary trees with…
The resilience of a complex interconnected system concerns the size of the macroscopic functioning node clusters after external perturbations based on a random or designed scheme. For a representation of the interconnected systems with…
We study the explainable clustering problem first posed by Moshkovitz, Dasgupta, Rashtchian, and Frost (ICML 2020). The goal of explainable clustering is to fit an axis-aligned decision tree with $K$ leaves and minimal clustering cost…