Related papers: Constructing minimal phylogenetic networks from so…
Apart from the role the clustering coefficient plays in the definition of the small-world phenomena, it also has great relevance for practical problems involving networked dynamical systems. To study the impact of the clustering coefficient…
Fixed parameter tractable (FPT) algorithms run in time f(p(x)) poly(|x|), where f is an arbitrary function of some parameter p of the input x and poly is some polynomial function. Treewidth, branchwidth, cliquewidth, NLC-width, rankwidth,…
We study the linearizability monitoring problem, which asks whether a given concurrent history of a data structure is equivalent to some sequential execution of the same data structure. In general, this problem is $\textsf{NP}$-hard, even…
Asking which sets are fixed-parameter tractable for a given parameterization constitutes much of the current research in parameterized complexity theory. This approach faces some of the core difficulties in complexity theory. By focussing…
The C-Planarity problem asks for a drawing of a $\textit{clustered graph}$, i.e., a graph whose vertices belong to properly nested clusters, in which each cluster is represented by a simple closed region with no edge-edge crossings, no…
In the Correlation Clustering, also known as Cluster Editing, we are given an undirected n-vertex graph G and a positive integer k. The task is to decide if G can be transformed into a cluster graph, i.e., a disjoint union of cliques, by…
Deep neural networks are vulnerable to adversarial attacks and hard to interpret because of their black-box nature. The recently proposed invertible network is able to accurately reconstruct the inputs to a layer from its outputs, thus has…
Isocontours in road networks represent the area that is reachable from a source within a given resource limit. We study the problem of computing accurate isocontours in realistic, large-scale networks. We propose polygons with minimum…
We propose a deterministic weighted scale-free small-world model for considering pseudofractal web with the coevolution of topology and weight. In the model, we have the degree distribution exponent $\gamma$ restricted to a range between 2…
It has recently been shown that the NP-hard problem of calculating the minimum number of hybridization events that is needed to explain a set of rooted binary phylogenetic trees by means of a hybridization network is fixed-parameter…
We investigate topologically biased failure in scale-free networks with degree distribution $P(k) \propto k^{-\gamma}$. The probability $p$ that an edge remains intact is assumed to depend on the degree $k$ of adjacent nodes $i$ and $j$…
A phylogenetic tree is a graphical representation of an evolutionary history of taxa in which the leaves correspond to the taxa and the non-leaves correspond to speciations. One of important problems in phylogenetic analysis is to assemble…
$\kC$ clustering is a fundamental classification problem, where the task is to categorize the given collection of entities into $k$ clusters and come up with a representative for each cluster, so that the maximum distance between an entity…
We investigate a process of joining $k$ random spanning trees on a fixed clique $K_n$. The joined trees may not be disjoint and multiple edges are replaced by one simple edge. This process produces a simple graph $G$ on $n$~vertices with an…
We study the problem of recognizing the cluster structure of a graph in the framework of property testing in the bounded degree model. Given a parameter $\varepsilon$, a $d$-bounded degree graph is defined to be $(k, \phi)$-clusterable, if…
We study first-order model checking, by which we refer to the problem of deciding whether or not a given first-order sentence is satisfied by a given finite structure. In particular, we aim to understand on which sets of sentences this…
Stream graphs are a very useful mode of representation for temporal network data, whose richness offers a wide range of possible approaches. The various methods aimed at generalising the classical approaches applied to static networks are…
Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…
We propose an extended local-world evolving network model including a triad formation step. In the process of network evolution, random fluctuation in the number of new edges is involved. We derive analytical expressions for degree…
Phylogenetic trees canonically arise as embeddings of phylogenetic networks. We recently showed that the problem of deciding if two phylogenetic networks embed the same sets of phylogenetic trees is computationally hard, \blue{in…