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Estimation of Distribution Algorithms (EDAs) require flexible probability models that can be efficiently learned and sampled. Generative Adversarial Networks (GAN) are generative neural networks which can be trained to implicitly model the…

Neural and Evolutionary Computing · Computer Science 2016-08-09 Malte Probst

Prestrained elastic networks arise in a number of biological and technological systems ranging from the cytoskeleton of cells to tensegrity structures. To understand the response of such a network as a function of the prestrain, we consider…

Statistical Mechanics · Physics 2022-07-13 Ihusan Adam , Franco Bagnoli , Duccio Fanelli , L. Mahadevan , Paolo Paoletti

Coupled learning is a contrastive scheme for tuning the properties of individual elements within a network in order to achieve desired functionality of the system. It takes advantage of physics both to learn using local rules and to…

Soft Condensed Matter · Physics 2024-07-09 Lauren E. Altman , Menachem Stern , Andrea J. Liu , Douglas J. Durian

Feature selection is an essential step in data science pipelines to reduce the complexity associated with large datasets. While much research on this topic focuses on optimizing predictive performance, few studies investigate stability in…

Tuning curves characterizing the response selectivities of biological neurons often exhibit large degrees of irregularity and diversity across neurons. Theoretical network models that feature heterogeneous cell populations or random…

Quantitative Methods · Quantitative Biology 2017-07-20 Takafumi Arakaki , G. Barello , Yashar Ahmadian

We consider the problem of model selection and estimation in situations where the number of parameters diverges with the sample size. When the dimension is high, an ideal method should have the oracle property [J. Amer. Statist. Assoc. 96…

Statistics Theory · Mathematics 2009-08-14 Hui Zou , Hao Helen Zhang

Tensor networks are a tool first employed in the context of many-body quantum physics that now have a wide range of uses across the computational sciences, from numerical methods to machine learning. Methods integrating tensor networks into…

Machine Learning · Computer Science 2026-04-27 John Gardiner , Javier Lopez-Piqueres

Elastic network models (ENMs) are valuable and efficient tools for characterizing the collective internal dynamics of proteins based on the knowledge of their native structures. The increasing evidence that the biological functionality of…

Biomolecules · Quantitative Biology 2015-09-01 Giovanni Pinamonti , Sandro Bottaro , Cristian Micheletti , Giovanni Bussi

Revealing hidden geometry and topology in noisy data sets is a challenging task. Elastic principal graph is a computationally efficient and flexible data approximator based on embedding a graph into the data space and minimizing the energy…

Data Structures and Algorithms · Computer Science 2019-09-25 A. N. Gorban , E. M. Mirkes , A. Zinovyev

In machine learning, there is a fundamental trade-off between ease of optimization and expressive power. Neural Networks, in particular, have enormous expressive power and yet are notoriously challenging to train. The nature of that…

Machine Learning · Computer Science 2015-11-24 Diogo Almeida , Nate Sauder

Advances in manufacturing and characterization of complex molecular systems have created a need for new methods for design at molecular length scales. Emerging approaches are increasingly relying on the use of Artificial Intelligence (AI),…

Soft Condensed Matter · Physics 2022-08-17 Dan Mendels , Fabian Byléhn , Timothy W. Sirk , Juan J. de Pablo

We describe and analyze a hybrid finite element/neural network method for predicting solutions of partial differential equations. The methodology is designed for obtaining fine scale fluctuations from neural networks in a local manner. The…

Numerical Analysis · Mathematics 2026-02-24 Uladzislau Kapustsin , Utku Kaya , Johannes Pfefferer , Thomas Richter

We derive a differential equation that governs the evolution of the generalization gap when a deep network is trained by gradient descent. This differential equation is controlled by two quantities, a contraction factor that brings together…

Machine Learning · Computer Science 2025-10-14 Rubing Yang , Pratik Chaudhari

This work targets the influence of disorder on the relaxed structure and macroscopic mechanical properties of elastic networks. We construct network classes of different types of disorder (length, topology and stiffness), which are…

Soft Condensed Matter · Physics 2025-08-29 Stefanie Heyden , Mohit Pundir , Eric R. Dufresne , David S. Kammer

In this paper we propose a method to generate suitably refined finite element meshes using neural networks. As a model problem we consider a linear elasticity problem on a planar domain (possibly with holes) having a polygonal boundary. We…

Numerical Analysis · Mathematics 2022-03-16 Chiu Ling Chan , Felix Scholz , Thomas Takacs

Equivariant neural networks have been widely used in a variety of applications due to their ability to generalize well in tasks where the underlying data symmetries are known. Despite their successes, such networks can be difficult to…

Machine Learning · Computer Science 2025-01-06 Stefanos Pertigkiozoglou , Evangelos Chatzipantazis , Shubhendu Trivedi , Kostas Daniilidis

Neural nets are known to be universal approximators. In particular, formal neurons implementing wavelets have been shown to build nets able to approximate any multidimensional task. Such very specialized formal neurons may be, however,…

Disordered Systems and Neural Networks · Physics 2009-11-07 B. G. Giraud , A. Touzeau

Inspired by the diversity of biological neurons, quadratic artificial neurons can play an important role in deep learning models. The type of quadratic neurons of our interest replaces the inner-product operation in the conventional neuron…

Machine Learning · Computer Science 2023-09-12 Feng-Lei Fan , Mengzhou Li , Fei Wang , Rongjie Lai , Ge Wang

Disordered elastic networks are a model material system in which it is possible to achieve tunable and trainable functions. This work investigates the modification of local mechanical properties in disordered networks inspired by allosteric…

Soft Condensed Matter · Physics 2025-01-10 Savannah D. Gowen

In recent years, the use of machine learning has become increasingly popular in the context of lattice field theories. An essential element of such theories is represented by symmetries, whose inclusion in the neural network properties can…

High Energy Physics - Lattice · Physics 2021-12-24 Srinath Bulusu , Matteo Favoni , Andreas Ipp , David I. Müller , Daniel Schuh