English
Related papers

Related papers: Lagrangians for biological models

200 papers

In this paper, we consider nonlinear optimization problems with nonlinear equality constraints and bound constraints on the variables. For the solution of such problems, many augmented Lagrangian methods have been defined in the literature.…

Optimization and Control · Mathematics 2022-01-12 Andrea Cristofari , Gianni Di Pillo , Giampaolo Liuzzi , Stefano Lucidi

The numerical analysis of variational integrators relies on variational error analysis, which relates the order of accuracy of a variational integrator with the order of approximation of the exact discrete Lagrangian by a computable…

Numerical Analysis · Mathematics 2011-02-15 Melvin Leok , Tatiana Shingel

We establish a log-supermodularity property for probability distributions on binary patterns observed at the tips of a tree that are generated under any 2--state Markov process. We illustrate the applicability of this result in…

Populations and Evolution · Quantitative Biology 2008-05-21 Mike Steel , Beata Faller

Shapere and Wilczek ( Phys. Rev. Lett. 109, 160402 and 200402 (2012)) have recently described certain singular Lagrangian systems which display spontaneous breaking of time translation symmetry. We begin by considering the standard Lienard…

Exactly Solvable and Integrable Systems · Physics 2019-04-26 A Ghose-Choudhury , Partha Guha

Computation biology helps to understand all processes in organisms from interaction of molecules to complex functions of whole organs. Therefore, there is a need for mathematical methods and models that deliver logical explanations in a…

Molecular Networks · Quantitative Biology 2018-10-10 Ines Abdeljaoued-Tej , Alia BenKahla , Ghassen Haddad , Annick Valibouze

We explore the Jacobi Last Multiplier as a means for deriving the Lagrangian of a fourth-order differential equation. In particular we consider the classical problem of the Pais-Uhlenbeck oscillator and write down the accompanying…

Mathematical Physics · Physics 2013-02-07 B. Bagchi , A. Ghose Choudhury , Partha Guha

In this work, we develop a control-theoretic framework for constrained optimization problems with composite objective functions including non-differentiable terms. Building on the proximal augmented Lagrangian formulation, we construct a…

Optimization and Control · Mathematics 2026-05-05 V. Cerone , S. M. Fosson , S. Pirrera , A. Re , D. Regruto

We shall use the variational decomposition technique in order to calculate equations of motion and Noether energy-momentum complex for some classes of non-linear gravitational Lagrangians within the first-order (Palatini) formalism. In…

General Relativity and Quantum Cosmology · Physics 2007-05-23 A. Borowiec , M. Francaviglia

We review a perturbative approach to deal with Lagrangians with higher or infinite order time derivatives. It enables us to construct a consistent Poisson structure and Hamiltonian with only first time derivatives order by order in…

High Energy Physics - Theory · Physics 2008-11-26 Tai-Chung Cheng , Pei-Ming Ho , Mao-Chuang Yeh

The field algebra of the minimal models of W-algebras is amenable to a very simple description as a polynomial algebra generated by few elementary fields, corresponding to order parameters. Using this description, the complete…

High Energy Physics - Theory · Physics 2009-10-22 J. C. Gaite

The concept of stochastic Lagrangian and its use in statistical dynamics is illustrated theoretically, and with some examples. Dynamical variables undergoing stochastic differential equations are stochastic processes themselves, and their…

Statistical Mechanics · Physics 2020-03-18 Massimo Materassi

We construct a Lagrangian for general nonlinear electrodynamics that features electric and magnetic potentials on equal footing. In the language of this Lagrangian, discrete and continuous electric-magnetic duality symmetries can be…

High Energy Physics - Theory · Physics 2022-01-06 Zhirayr Avetisyan , Oleg Evnin , Karapet Mkrtchyan

In this paper we present a Lagrangian method that allows the physical degree of freedom count for any Lagrangian system without having to perform neither Dirac nor covariant canonical analyses. The essence of our method is to establish a…

High Energy Physics - Theory · Physics 2014-12-17 Bogar Díaz , Daniel Higuita , Merced Montesinos

We propose a probabilistic extension of Wiener-Laguerre models for causal operator learning. Classical Wiener-Laguerre models parameterize stable linear dynamics using orthonormal Laguerre bases and apply a static nonlinear map to the…

Methodology · Statistics 2026-02-16 Rahul Manavalan , Filip Tronarp

By and large, Backpropagation (BP) is regarded as one of the most important neural computation algorithms at the basis of the progress in machine learning, including the recent advances in deep learning. However, its computational structure…

Artificial Intelligence · Computer Science 2018-08-22 Alessandro Betti , Marco Gori , Giuseppe Marra

Granger causality is a commonly used method for uncovering information flow and dependencies in a time series. Here we introduce JGC (Jacobian Granger Causality), a neural network-based approach to Granger causality using the Jacobian as a…

Machine Learning · Computer Science 2022-05-20 Suryadi , Yew-Soon Ong , Lock Yue Chew

In this paper we apply the method of Lagrangian descriptors to explore the geometrical structures in phase space that govern the dynamics of dissipative systems. We demonstrate through many classical examples taken from the nonlinear…

Dynamical Systems · Mathematics 2021-10-04 V. J. García-Garrido , J. García-Luengo

In this article we investigate whether a theory based on a classical Lagrangian for the minimal Standard-Model Extension (SME) can be quantized such that the result is equal to the corresponding low-energy Hamilton operator obtained from…

High Energy Physics - Theory · Physics 2016-07-20 Marco Schreck

This thesis aims to study nonlocal Lagrangians with a finite and an infinite number of degrees of freedom. We obtain an extension of Noether's theorem and Noether's identities for such Lagrangians. We then set up a Hamiltonian formalism for…

High Energy Physics - Theory · Physics 2023-04-24 Carlos Heredia

Approximations to the exact solutions for gravitational instability in the expanding Universe are extremely useful for understanding the evolution of large--scale structure. We report on a series of tests of Newtonian Lagrangian…

Astrophysics · Physics 2007-05-23 T. Buchert , A. L. Melott , A. G. Weiss