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In this paper we present a simple microscopic stochastic model describing short term plasticity within a large homogeneous network of interacting neurons. Each neuron is represented by its membrane potential and by the residual calcium…

Probability · Mathematics 2020-01-29 Antonio Galves , Eva Löcherbach , Christophe Pouzat , Errico Presutti

Large groups of active cilia collectively beat in a fluid medium as metachronal waves, essential for some microorganisms motility and for flow generation in mucociliary clearance. Several models can predict the emergence of metachronal…

Soft Condensed Matter · Physics 2024-05-08 Supravat Dey , Gladys Massiera , Estelle Pitard

The mechanisms and impact of correlated, or synchronous, firing among pairs and groups of neurons is under intense investigation throughout the nervous system. A ubiquitous circuit feature that can give rise to such correlations consists of…

Neurons and Cognition · Quantitative Biology 2015-03-19 Andrea K. Barreiro , Evan L. Thilo , Eric Shea-Brown

Quantification of neuronal correlations in neuron populations helps us to understand neural coding rules. Such quantification could also reveal how neurons encode information in normal and disease conditions like Alzheimer's and…

Neurons and Cognition · Quantitative Biology 2021-05-10 Sathish Ande , Srinivas Avasarala , Ajith Karunarathne , Lopamudra Giri , Soumya Jana

With the recent availability of state-of-the-art heavy-ion stable and radioactive beams, there has been a renew interest in the investigation of nuclear reactions with heavy ions. I first present the role of inelastic and transfer channel…

Nuclear Theory · Physics 2013-06-13 C. Beck

The collective motion of bacterial cells in a shallow circular pool is systematically studied using the bacterial species $Bacillus$ $subtilis$. The ratio of cell length to pool diameter (i.e., the reduced cell length) ranges from 0.06 to…

Biological Physics · Physics 2015-10-06 Jun-ichi Wakita , Shota Tsukamoto , Ken Yamamoto , Makoto Katori , Yasuyuki Yamada

The hierarchy of scales which would allow dimension-six contact interactions to parametrise New Physics may not be verified at colliders. Instead, we explore the feasability and usefulness of parametrising the high-energy tail of…

High Energy Physics - Phenomenology · Physics 2015-06-23 Sacha Davidson , Sebastien Descotes-Genon , Patrice Verdier

In this work, we propose a simple yet effective solution to the problem of connectome inference in calcium imaging data. The proposed algorithm consists of two steps. First, processing the raw signals to detect neural peak activities.…

The predominant structural protein in vertebrates is collagen, which plays a key role in extracellular matrix and connective tissue mechanics. Despite its prevalence and physical importance in biology, the mechanical properties of molecular…

Biological Physics · Physics 2018-11-14 Naghmeh Rezaei , Aaron Lyons , Nancy R. Forde

Ion channels are important proteins for physiological information transfer and functional control. To predict the microscopic origins of their voltage-conductance characteristics, we here applied dissipation-corrected targeted Molecular…

Biological Physics · Physics 2021-12-28 Miriam Jäger , Thorsten Koslowski , Steffen Wolf

A wide variety of biological as well as non-biological processes and phenomena involving ion channels, binding, pH, folding/unfolding and effects of chain length are well represented by multiphasic profiles, a series of straight lines…

Biological Physics · Physics 2015-12-08 Per Nissen

The ultimate active constituents of the living medium, membranes, ions and molecules, are at the level of the nanometer. Their interactions thus require a quantum processing. The characteristic Action A, linked to the "quantum objects" :…

Biological Physics · Physics 2009-02-18 J. Breton , V. Breton

Potassium (K$^+$) channels regulate the flux of K$^+$ ions through cell membranes and plays significant roles in many physiological functions. This work studies the KcsA potassium channel, including the selectivity and current-voltage (IV)…

Biological Physics · Physics 2019-08-14 Zilong Song , Xiulei Cao , Tzyy-Leng Horng , Huaxiong Huang

Ionic liquid crystals (ILCs) are anisotropic mesogenic molecules which carry charges and therefore combine properties of liquid crystals, e.g., the formation of mesophases, and of ionic liquids, such as low melting temperatures and tiny…

Soft Condensed Matter · Physics 2017-10-31 Hendrik Bartsch , Markus Bier , Siegfried Dietrich

Many neurological diseases originate in the dysfunction of cellular ion channels. Their diagnosis presents a challenge especially when alterations in the complement of ion channels are a priori unknown. Current approaches based on voltage…

Quantitative Methods · Quantitative Biology 2025-07-01 Paul G Morris , Joseph D. Taylor , Julian F. R. Paton , Alain Nogaret

NMDA receptors (NMDA-R) typically contribute to excitatory synaptic transmission in the central nervous system. While calcium influx through NMDA-R plays a critical role in synaptic plasticity, experimental evidence indicates that…

Neurons and Cognition · Quantitative Biology 2020-02-03 David Gall , Geneviève Dupont

We reformulate the Leslie effects that describe the dynamic cross-couplings in chiral liquid crystals driven by the transport of heat, electric charge, and mass. The Ericksen--Leslie model is extended in the linear response framework by…

Soft Condensed Matter · Physics 2025-12-01 Shunsuke Takano , Takuya Nakanishi , Kenta Nakagawa , Toru Asahi

In the past few years, new technologies in the field of neuroscience have made it possible to simultaneously image activity in large populations of neurons at cellular resolution in behaving animals. In mid-2016, a huge repository of this…

Applications · Statistics 2017-03-22 Ashley Petersen , Noah Simon , Daniela Witten

When plotted in linear transformations of the Michaelis-Menten equation, ion uptake in plants has been shown to be multiphasic, i.e. to be represented by a series of straight lines separated by discontinuous transitions (Nissen 1971, 1974,…

Biological Physics · Physics 2017-12-06 Per Nissen

Lithium zirconium chlorides (LZCs) present a promising class of cost-effective solid electrolyte for next-generation all-solid-state batteries. The unique crystal structure of LZCs plays a crucial role in facilitating lithium-ion mobility,…

Materials Science · Physics 2025-10-09 Hanzeng Guo , Volodymyr Koverga , Selva Chandrasekaran Selvaraj , Anh T. Ngo