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We investigate the influences of the excluded volume of molecules on biochemical reaction processes on 2-dimensional surfaces using a model of signal transduction processes on biomembranes. We perform simulations of the 2-dimensional…

Biomolecules · Quantitative Biology 2013-05-08 Masashi Fujii , Hiraku Nishimori , Akinori Awazu

We propose a theoretical approach to quantitatively account for the role of entanglement in the nucleation of polymer melts, which is the unique feature of polymer differentiated from small molecules. By performing molecular dynamics…

Soft Condensed Matter · Physics 2022-03-07 Fan Peng , Cui Nie , Tingyu Xu , Wei Chen , Wancheng Yu , Junfang Sheng , Liangbin Li

The dynamics of flexible polymer molecules are often assumed to be governed by hydrodynamics of the solvent. However there is considerable evidence that internal dissipation of a polymer contributes as well. Here we investigate the dynamics…

Soft Condensed Matter · Physics 2013-05-29 J. M. Deutsch

We derive bounds on the volume of an inclusion in a body in two or three dimensions when the conductivities of the inclusion and the surrounding body are complex and assumed to be known. The bounds are derived in terms of average values of…

Analysis of PDEs · Mathematics 2015-06-09 Andrew E. Thaler , Graeme W. Milton

In this paper we take a deeper look at the technically elementary but physically robust viewpoint in which the Casimir energy in dielectric media is interpreted as the change in the total zero point energy of the electromagnetic vacuum…

High Energy Physics - Theory · Physics 2009-10-30 Carmen Molina-Paris , Matt Visser

In this paper we present the effects produced by the temperature in the renormalized vacuum expectation value of the zero-zero component of the energy-momentum tensor associated with massless left-handed spinor field in the pointlike global…

High Energy Physics - Theory · Physics 2009-11-07 F. Carvalho , E. R. Bezerra de Mello

Molecular dynamics simulations were performed for a polymer melt. In quiescent states, the inter-chain interaction energy supported by each particle takes relatively large values persistently for long times if the particle is close to an…

Soft Condensed Matter · Physics 2007-05-23 Ryoichi Yamamoto , Akira Onuki

The effect of confinement in the segmental relaxation of polymers is considered. On the basis of a thermodynamic model we discuss the emerging relevance of the fast degrees of freedom in stimulating the much slower segmental relaxation, as…

Soft Condensed Matter · Physics 2015-05-13 Marco Pieruccini , Tiberio A. Ezquerra

A theoretical model is developed for predicting dynamic polymer depletion effects under the influence of fluid flow. The results are established by combining the two-fluid model and the self-consistent field theory. We consider a uniform…

Soft Condensed Matter · Physics 2012-08-02 Takashi Taniguchi , Yuichiro Arai , Remco Tuinier , Tai-Hsi Fan

The influence of an external flow on the relaxation dynamics of a single polymer is investigated theoretically and numerically. We show that a pronounced dynamical slowdown occurs in the vicinity of the coil-stretch transition, especially…

Chaotic Dynamics · Physics 2007-05-23 Antonio Celani , Alberto Puliafito , Dario Vincenzi

We investigate the role of surface plasmons in the electromagnetic Casimir effect at finite temperature, including situations out of global thermal equilibrium. The free energy is calculated analytically and expanded for different regimes…

Quantum Physics · Physics 2010-08-05 F. Intravaia , H. Haakh , C. Henkel

Inspired by the recent development on calculating the free energy change via a relaxation process [Nat. Phys. 14, 842 (2018)], we investigate the role of heat released in an irreversible relaxation following a large perturbation. Utilizing…

By tracking small particles in the bulk of an intensely turbulent flow, we show that even a very small concentration of long-chain polymers disrupts the usual turbulent energy cascade. The polymers affect scales much larger than their…

Fluid Dynamics · Physics 2007-12-31 Nicholas T. Ouellette , Haitao Xu , Eberhard Bodenschatz

Monte Carlo simulations are used to study the behavior of two polymers under confinement in a cylindrical tube. Each polymer is modeled as a chain of hard spheres. We measure the free energy of the system, F, as a function of the distance…

Soft Condensed Matter · Physics 2015-06-22 James M. Polson , Logan G. Montgomery

The effect of concentration on coil-stretch hysteresis in extensional flows of polymer solutions is examined with insights from Brownian dynamics simulations of isolated chains and scaling theory for non-dilute solutions. In the hysteresis…

Soft Condensed Matter · Physics 2013-02-01 Ranganathan Prabhakar

The dynamics of a polymer ring enclosing a constant {\sl algebraic} area is studied. The constraint of a constant area is found to couple the dynamics of the two Cartesian components of the position vector of the polymer ring through the…

Soft Condensed Matter · Physics 2009-11-10 Arti Dua , Thomas A. Vilgis

The number of configurations of a polymer is reduced in the presence of a barrier or an obstacle. The resulting loss of entropy adds a repulsive component to other forces generated by interaction potentials. When the obstructions are scale…

Soft Condensed Matter · Physics 2015-06-11 Mohammad F. Maghrebi , Yacov Kantor , Mehran Kardar

Recent progress on molecular theories of hydration of nonpolar solutes in aqueous solution has led to new ways of thinking about the old issue of free, or "available," volume in liquids. This article surveys the principal new results with…

Chemical Physics · Physics 2007-05-23 Lawrence R. Pratt , Shekhar Garde , Gerhard Hummer

A general formula is derived for the finite volume dependence of vacuum expectation values analogous to Luscher's formula for the masses. The result involves no integrals over kinematic quantities and depends only on the matrix element…

High Energy Physics - Lattice · Physics 2010-04-05 Johan Bijnens , Karim Ghorbani

We show that the force generated by active enzyme molecules are strong enough to influence the dynamics of their surroundings under artificial crowded environments. We measured the behavior of polymer microparticles in a…

Soft Condensed Matter · Physics 2023-05-10 Arnab Maiti , Yuki Koyano , Hiroyuki Kitahata , Krishna Kanti Dey