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With advances in sequencing technologies, there are now massive amounts of genomic data from across all life, leading to the possibility that a robust Tree of Life can be constructed. However, "gene tree heterogeneity", which is when…

Populations and Evolution · Quantitative Biology 2018-03-08 Sebastien Roch , Michael Nute , Tandy Warnow

We consider the problem of computing the measure of a regular set of infinite binary trees. While the general case remains unsolved, we show that the measure of a language can be computed when the set is given in one of the following three…

Formal Languages and Automata Theory · Computer Science 2020-02-03 Marcin Przybyłko , Michał Skrzypczak

We consider a uniform spanning tree in a $\delta$-square grid approximation of a planar domain $\Omega$. For given integer $n\ge 2$, we condition the tree on the following $n$-arm event: we pick $n$ branches, emanating from $n$ points…

Probability · Mathematics 2025-12-24 Nathanaël Berestycki , Marcin Lis , Mingchang Liu , Eveliina Peltola

We prove that there is $c>0$ such that for all sufficiently large $n$, if $T_1,\dots,T_n$ are any trees such that $T_i$ has $i$ vertices and maximum degree at most $cn/\log n$, then $\{T_1,\dots,T_n\}$ packs into $K_n$. Our main result…

Combinatorics · Mathematics 2022-06-22 Peter Allen , Julia Böttcher , Dennis Clemens , Jan Hladký , Diana Piguet , Anusch Taraz

The celebrated formula of Otter \emph{[Ann. of Math. (2) 49 (1948), 583--599]} asserts that the complete graph contains exponentially many non-isomorphic spanning trees. In this paper, we show that every connected almost regular graph with…

Combinatorics · Mathematics 2026-01-13 Hyunwoo Lee

Let $(X, \mfA,P)$, $(Y, \mfB,Q)$ be two arbitrary probability spaces and $\P:=\{(\mfA,P_y):y\in{Y}\}$ be a regular conditional probability on $\mfA$ with respect to $Q$. Denote by $R$ the skew product of $P$ and $Q$ determined by…

Probability · Mathematics 2026-03-09 Kazimierz Musiał

We consider the biased random walk on a tree constructed from the set of finite self-avoiding walks on a lattice, and use it to construct probability measures on infinite self-avoiding walks. The limit measure (if it exists) obtained when…

Probability · Mathematics 2019-12-25 Vincent Beffara , Cong Bang Huynh

Lov\'asz (1967) showed that two graphs $G$ and $H$ are isomorphic if and only if they are homomorphism indistinguishable over the class of all graphs, i.e. for every graph $F$, the number of homomorphisms from $F$ to $G$ equals the number…

Combinatorics · Mathematics 2025-03-13 Martin Grohe , Gaurav Rattan , Tim Seppelt

The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes.…

Discrete Mathematics · Computer Science 2019-10-30 Manuel Lafond , Marc Hellmuth

Rare events have played an increasing role in molecular phylogenetics as potentially homoplasy-poor characters.In this contribution we analyze the phylogenetic information content from a combinatorial point of view by consid-ering the…

Discrete Mathematics · Computer Science 2017-06-15 Marc Hellmuth , Maribel Hernandez-Rosales , Yangjing Long , Peter F. Stadler

Typically, models with a heterogeneous property are considerably harder to analyze than the corresponding homogeneous models, in which the heterogeneous property is replaced with its average value. In this study we show that any outcome of…

Classical Analysis and ODEs · Mathematics 2012-04-05 Gadi Fibich , Arieh Gavious , Eilon Solan

Given a class of graphs F, we say that a graph G is universal for F, or F-universal, if every H in F is contained in G as a subgraph. The construction of sparse universal graphs for various families F has received a considerable amount of…

Combinatorics · Mathematics 2011-08-24 Daniel Johannsen , Michael Krivelevich , Wojciech Samotij

Consider a tree network $T$, where each edge acts as an independent copy of a given channel $M$, and information is propagated from the root. For which $T$ and $M$ does the configuration obtained at level $n$ of $T$ typically contain…

Probability · Mathematics 2007-05-23 Elchanan Mossel , Yuval Peres

We study tree-indexed random walks as introduced by Benjamini, H\"aggstr\"om, and Mossel, i.e. labelings of a tree for which adjacent vertices have labels differing by 1. It is a conjecture of those authors that the distribution of the…

Combinatorics · Mathematics 2019-01-29 Aaron Berger , Caleb Ji , Erik Metz

Trees without vertices of degree $2$ are sometimes named topological trees. In this work, we bring forward the study of the inducibility of (rooted) topological trees with a given number of leaves. The inducibility of a topological tree $S$…

Combinatorics · Mathematics 2018-02-20 Audace Amen Vioutou Dossou-Olory , Stephan Wagner

We investigate the connection between the abelian rank of a countable amenable group and the existence of good averaging sequences (e.g. for the pointwise ergodic theorem). We show that if $G$ is a group of abelian rank $r(G)$ then any…

Dynamical Systems · Mathematics 2014-09-23 Michael Hochman

An edge-colored rooted directed tree (aka arborescence) is path-monochromatic if every path in it is monochromatic. Let $k,\ell$ be positive integers. For a tournament $T$, let $f_T(k)$ be the largest integer such that every $k$-edge…

Combinatorics · Mathematics 2024-04-08 Raphael Yuster

A homogeneous set of an $n$-vertex graph is a set $X$ of vertices ($2\le |X|\le n-1$) such that every vertex not in $X$ is either complete or anticomplete to $X$. A graph is called prime if it has no homogeneous set. A chain of length $t$…

Combinatorics · Mathematics 2016-07-26 Maria Chudnovsky , Ringi Kim , Sang-il Oum , Paul Seymour

Full binary trees naturally represent commutative non-associative products. There are many important examples of these products: finite-precision floating-point addition and NAND gates, among others. Balance in such a tree is highly…

Discrete Mathematics · Computer Science 2021-08-27 Laura Monroe

The reliability of a phylogenetic inference method from genomic sequence data is ensured by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic trees from the posterior distribution given sequence data.…

Metric Geometry · Mathematics 2016-06-10 Alex Gavryushkin , Alexei J. Drummond