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Most molecular diagram parsers recover chemical structure from raster images (e.g., PNGs). However, many PDFs include commands giving explicit locations and shapes for characters, lines, and polygons. We present a new parser that uses these…

Computer Vision and Pattern Recognition · Computer Science 2025-02-27 Ayush Kumar Shah , Bryan Manrique Amador , Abhisek Dey , Ming Creekmore , Blake Ocampo , Scott Denmark , Richard Zanibbi

Sentiment analysis consists of evaluating opinions or statements from the analysis of text. Among the methods used to estimate the degree in which a text expresses a given sentiment, are those based on Gaussian Processes. However,…

Computation and Language · Computer Science 2019-10-15 Ibai Roman , Alexander Mendiburu , Roberto Santana , Jose A. Lozano

Both experimental and computational methods for the exploration of structure, functionality, and properties of materials often necessitate the search across broad parameter spaces to discover optimal experimental conditions and regions of…

Computational Physics · Physics 2021-08-31 Maxim Ziatdinov , Ayana Ghosh , Sergei V. Kalinin

Continuous-variable Gaussian entanglement is an attractive notion, both as a fundamental concept in quantum information theory, based on the well-established Gaussian formalism for phase-space variables, and as a practical resource in…

Quantum Physics · Physics 2026-05-07 E. Shchukin , P. van Loock

For almost a century, since Bernal\'s attempts at a molecular theory of liquid structure(Bernal [1]), correlation functions have been the bridge to compare theoretical calculations with experimental measurements in the study of disordered…

The amount of large-scale scientific computing software is dramatically increasing. In this work, we designed a new language, named feature query language (FQL), to collect and extract software features from a quick static code analysis. We…

Software Engineering · Computer Science 2019-05-24 Weijian Zheng , Dali Wang , Fengguang Song

There has been an increase of interest in code search using natural language. Assessing the performance of such code search models can be difficult without a readily available evaluation suite. In this paper, we present an evaluation…

Software Engineering · Computer Science 2019-10-03 Hongyu Li , Seohyun Kim , Satish Chandra

Recent advances in computational materials science present novel opportunities for structure discovery and optimization, including uncovering of unsuspected compounds and metastable structures, electronic structure, surface, and…

In this article, we present an improved version of the PULSE method (Partition function Unsupervised Learning Sampling and Evaluation) for estimating the thermodynamic properties of chemically disordered compounds. The aim is to reduce the…

Statistical Mechanics · Physics 2026-05-28 Baptiste Bernard , Luca Messina , Eiji Kawasaki , Emeric Bourasseau

Near linear scaling fragment based quantum chemical calculations are becoming increasingly popular for treating large systems with high accuracy and is an active field of research. However, it remains difficult to set up these calculations…

Computational Engineering, Finance, and Science · Computer Science 2012-09-20 Casper Steinmann , Mikael W. Ibsen , Anne S. Hansen , Jan H. Jensen

In this paper we present an overview of several visualization techniques to support the search process in Digital Libraries (DLs). The search process typically can be separated into three major phases: query formulation and refinement,…

Digital Libraries · Computer Science 2013-04-16 Wilko van Hoek , Philipp Mayr

This work introduces a new software package `Sesame' for the numerical computation of classical semiconductor equations. It supports 1 and 2-dimensional systems and provides tools to easily implement extended defects such as grain…

Applied Physics · Physics 2019-05-01 Benoit Gaury , Yubo Sun , Peter Bermel , Paul M. Haney

We consider estimation of a deterministic unknown parameter vector in a linear model with non-Gaussian noise. In the Gaussian case, dimensionality reduction via a linear matched filter provides a simple low dimensional sufficient statistic…

Applications · Statistics 2013-11-05 Jakob Vovnoboy , Ami Wiesel

Quantum computing has noteworthy speedup over classical computing by taking advantage of quantum parallelism, i.e., the superposition of states. In particular, quantum search is widely used in various computationally hard problems. Grover's…

Quantum Physics · Physics 2021-03-29 Ji Liu , Huiyang Zhou

A method to search for local structural similarities in proteins at atomic resolution is presented. It is demonstrated that a huge amount of structural data can be handled within a reasonable CPU time by using a conventional relational…

Biomolecules · Quantitative Biology 2007-12-28 Akira R. Kinjo , Haruki Nakamura

In this study, we present a novel approach along with the needed computational strategies for efficient and scalable feature engineering of the crystal structure in compounds of different chemical compositions. This approach utilizes a…

Materials Science · Physics 2021-05-25 Prathik R. Kaundinya , Kamal Choudhary , Surya R. Kalidindi

A quantum algorithm for combinatorial search is presented that provides a simple framework for utilizing search heuristics. The algorithm is evaluated in a new case that is an unstructured version of the graph coloring problem. It performs…

Quantum Physics · Physics 2009-10-06 Tad Hogg

Exploiting the properties of quantum information to the benefit of machine learning models is perhaps the most active field of research in quantum computation. This interest has supported the development of a multitude of software…

Quantum Physics · Physics 2023-10-24 Francesco Di Marcantonio , Massimiliano Incudini , Davide Tezza , Michele Grossi

It is a consensus in signal processing that the Gaussian kernel and its partial derivatives enable the development of robust algorithms for feature detection. Fourier analysis and convolution theory have central role in such development. In…

Computer Vision and Pattern Recognition · Computer Science 2016-05-03 Paulo Sérgio Silva Rodrigues , Gilson Antonio Giraldi

Quasar pairs, a special subclass of galaxy pairs, are valuable in the investigation of quasar interaction, clustering, co-evolution between the two quasars' host galaxies, the growth of supermassive black holes, as well as the formation and…

Astrophysics of Galaxies · Physics 2026-03-12 Qihang Chen , Liang Jing , Xingyu Zhu , Yue Fang , Zizhao He , Zhuojun Deng , Cheng Xiang , Jianghua Wu