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We introduce GAUCHE, a library for GAUssian processes in CHEmistry. Gaussian processes have long been a cornerstone of probabilistic machine learning, affording particular advantages for uncertainty quantification and Bayesian optimisation.…

The OpenMX Viewer (Open source package for Material eXplorer Viewer) is a web-based graphical user interface (GUI) program for visualization and analysis of crystalline and molecular structures and 3D grid data in the Gaussian cube format…

Human-Computer Interaction · Computer Science 2019-04-09 Yung-Ting Lee , Taisuke Ozaki

We present FlowMO: an open-source Python library for molecular property prediction with Gaussian Processes. Built upon GPflow and RDKit, FlowMO enables the user to make predictions with well-calibrated uncertainty estimates, an output…

Machine Learning · Computer Science 2020-10-15 Henry B. Moss , Ryan-Rhys Griffiths

Gaussian processes are a class of flexible nonparametric Bayesian tools that are widely used across the sciences, and in industry, to model complex data sources. Key to applying Gaussian process models is the availability of well-developed…

Computation · Statistics 2019-07-02 Jamie Fairbrother , Christopher Nemeth , Maxime Rischard , Johanni Brea , Thomas Pinder

A software library for constructing and learning probabilistic models is presented. The library offers a set of building blocks from which a large variety of static and dynamic models can be built. These include hierarchical models for…

Mathematical Software · Computer Science 2012-07-09 Markus Harva , Tapani Raiko , Antti Honkela , Harri Valpola , Juha Karhunen

Future advancement of engineering applications is dependent on design of novel materials with desired properties. Enormous size of known chemical space necessitates use of automated high throughput screening to search the desired material.…

Machine Learning · Statistics 2019-04-10 Saket Mishra , Piyush Tagade

A novel pseudocode search engine is designed to facilitate efficient retrieval and search of academic papers containing pseudocode. By leveraging Elasticsearch, the system enables users to search across various facets of a paper, such as…

Information Retrieval · Computer Science 2024-11-20 Levent Toksoz , Mukund Srinath , Gang Tan , C. Lee Giles

Spreadsheets are end-user programs and domain models that are heavily employed in administration, financial forecasting, education, and science because of their intuitive, flexible, and direct approach to computation. As a result,…

Databases · Computer Science 2014-01-30 Michael Kohlhase , Corneliu Prodescu , Christian Liguda

A novel approach for calibrating quantum-chemical properties determined as part of a high-throughput virtual screen to experimental analogs is presented. Information on the molecular graph is extracted through the use of extended…

Chemical Physics · Physics 2015-10-05 Edward O. Pyzer-Knapp , Gregor N. Simm , Alan Aspuru-Guzik

Gaussian processes are rich distributions over functions, which provide a Bayesian nonparametric approach to smoothing and interpolation. We introduce simple closed form kernels that can be used with Gaussian processes to discover patterns…

Machine Learning · Statistics 2014-01-03 Andrew Gordon Wilson , Ryan Prescott Adams

A reliable and user-friendly characterisation of nano-objects in a target material is presented here in the form of a software data analysis package for interpreting small-angle X-ray scattering (SAXS) patterns. When provided with data on…

Data Analysis, Statistics and Probability · Physics 2014-12-08 Ingo Breßler , Brian R. Pauw , Andreas Thünemann

When characterizing materials, it can be important to not only predict their mechanical properties, but also to estimate the probability distribution of these properties across a set of samples. Constitutive neural networks allow for the…

Computational Engineering, Finance, and Science · Computer Science 2025-03-18 Jeremy A. McCulloch , Ellen Kuhl

We developed an interface program between a program suite for an automated search of chemical reaction pathways, GRRM, and a program package of semiempirical methods, MOPAC. A two-step structural search is proposed as an application of this…

Chemical Physics · Physics 2016-02-11 Yukihiro Ota , Sergi Ruiz-Barragan , Masahiko Machida , Motoyuki Shiga

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

Sequential algorithms are popular for experimental design, enabling emulation, optimisation and inference to be efficiently performed. For most of these applications bespoke software has been developed, but the approach is general and many…

Computation · Statistics 2021-10-18 Matthew A. Fisher , Onur Teymur , Chris. J. Oates

The essential operations of a quantum computer can be accomplished using solely optical elements, with different polarization or spatial modes representing the individual qubits. We present a simple all-optical implementation of Grover's…

Quantum Physics · Physics 2015-06-26 P. G. Kwiat , J. R. Mitchell , P. D. D. Schwindt , A. G. White

Efficient characterization of surface compositions across high-dimensional materials spaces is critical for accelerating the discovery of surface-dominated functional materials. While X-ray photoelectron spectroscopy allows detailed surface…

Materials Science · Physics 2025-06-19 F. Thelen , F. Lourens , A. Ludwig

Optimization methods are essential in solving complex problems across various domains. In this research paper, we introduce a novel optimization method called Gaussian Crunching Search (GCS). Inspired by the behaviour of particles in a…

Optimization and Control · Mathematics 2023-07-28 Benny Wong

We present a multimodal search tool that facilitates retrieval of chemical reactions, molecular structures, and associated text from scientific literature. Queries may combine molecular diagrams, textual descriptions, and reaction data,…

A Gaussian filter is a filter with impulse response of Gaussian function. These filters are useful in image processing of 2D signals, as it removes unnecessary noise. Also, they could be helpful for data transmission (e.g. GMSK modulation).…

Signal Processing · Electrical Eng. & Systems 2018-05-18 Alex Pappachen James , Aidyn Zhambyl , Anju Nandakumar
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