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Noise induced changes in the critical and oscillatory behavior of a Prey-Predator system are studied using power spectrum density and Spectral Amplification Factor (SAF) analysis. In the absence of external noise, the population densities…

Statistical Mechanics · Physics 2009-10-31 A. F. Rozenfeld , C. J. Tessone , E. Albano , H. S. Wio

The evolutionary origins of structural features in reconstructed gene-regulatory networks (GRNs) remain poorly understood, especially given the random aspects of gene expression. Here, we extend a classical model of GRN evolution to allow a…

Populations and Evolution · Quantitative Biology 2026-04-30 Leonardo Ivan Estrella Dzib , James Holehouse

Intrinsic or demographic noise has been shown to play an important role in the dynamics of a variety of systems including predator-prey populations, intracellular biochemical reactions, and oscillatory chemical reaction systems, and is…

Statistical Mechanics · Physics 2013-03-14 C. Michael Giver , Bulbul Chakraborty

The processes of gene expression are inherently stochastic, even for essential genes required for growth. How does the cell maximize fitness in light of noise? To answer this question, we build a mathematical model to explore the trade-off…

Molecular Networks · Quantitative Biology 2024-11-13 Teresa W. Lo , Han James Choi , Dean Huang , Paul A. Wiggins

We study synchronization and noise-induced resonance phenomena in systems of globally coupled oscillators, each possessing finite inertia. The behavior of the order parameter, which measures collective synchronization of the system, is…

Statistical Mechanics · Physics 2009-10-31 H. Hong , M. Y. Choi

Neurons in many brain areas can develop pronounced depolarized state of membrane potential (up state) in addition to the normal hyperpolarized down state near the resting potential. The influence of the up state on signal encoding, however,…

Neurons and Cognition · Quantitative Biology 2015-09-30 Wei Wei , Fred Wolf , Xiao-Jing Wang

In response to a sound stimulus, the inner ear emits sounds called otoacoustic emissions. While the exact mechanism for the production of otoacoustic emissions is not known, active motion of individual hair cells is thought to play a role.…

Pattern Formation and Solitons · Physics 2009-11-13 K. A. Montgomery

We consider classical nonlinear oscillators on hexagonal lattices. When the coupling between the elements is repulsive, we observe coexisting states, each one with its own basin of attraction. These states differ by their degree of…

Adaptation and Self-Organizing Systems · Physics 2015-06-16 F. Ionita , D. Labavic , M. A. Zaks , H. Meyer-Ortmanns

We evoke the idea of representation of the chaotic attractor by the set of unstable periodic orbits and disclose a novel noise-induced ordering phenomenon. For long unstable periodic orbits forming the strange attractor the weights (or…

Chaotic Dynamics · Physics 2014-05-14 Denis S. Goldobin

A new approach to investigate noise spikes due to regeneration in a relaxation oscillator is proposed. Noise spikes have not been satisfactorily accounted for in traditional phase noise models. This paper attempts to explain noise…

Statistical Mechanics · Physics 2015-01-22 Bosco Leung

Phenotypic noise underpins homeostasis and fitness of individual cells. Yet, the extent to which noise shapes cell-to-population properties in microbial active matter remains poorly understood. By quantifying variability in confluent…

Biological Physics · Physics 2023-11-07 Jayabrata Dhar , Anh L. P. Thai , Arkajyoti Ghoshal , Luca Giomi , Anupam Sengupta

A bifurcating system subject to multiplicative noise can exhibit on-off intermittency close to the instability threshold. For a canonical system, we discuss the dependence of this intermittency on the Power Spectrum Density (PSD) of the…

Statistical Mechanics · Physics 2015-05-13 Sebastien Aumaitre , Kirone Mallick , Francois Petrelis

Circadian rhythms in living organisms are temporal orders emerging from biochemical circuits driven out of equilibrium. Here, considering the KaiABC system, a minimal model in the synthetic biology, we study how the oscillation emerges from…

Statistical Mechanics · Physics 2026-04-10 YeongKyu Lee , Changbong Hyeon

Noise, through its interaction with the nonlinearity of the living systems, can give rise to counter-intuitive phenomena such as stochastic resonance, noise-delayed extinction, temporal oscillations, and spatial patterns. In this paper we…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Spagnolo , D. Valenti , A. Fiasconaro

We present a simple analytical tool which gives an approximate insight into the stationary behavior of nonlinear systems undergoing the influence of a weak and rapid noise from one dominating source, e.g. the kinetic equations describing a…

Quantitative Methods · Quantitative Biology 2008-08-13 Anna Ochab-Marcinek

Limit cycles are self-sustained, closed trajectories in phase space representing (un)-stable, periodic behavior in nonlinear dynamical systems. They underpin diverse natural phenomena, from neuronal firing patterns to engineering…

Adaptation and Self-Organizing Systems · Physics 2025-08-15 Sandip Saha , Suvam Pal , Dibakar Ghosh

Using an analytically solvable stochastic model, we study the properties of a simple genetic circuit consisting of multiple copies of an self-regulating gene. We analyse how the variation in gene copy number and the mutations changing the…

Molecular Networks · Quantitative Biology 2016-08-17 Jakub Jędrak , Anna Ochab-Marcinek

We study the oscillatory behaviour of a gene regulatory network with interlinked positive and negative feedback loop. Frequency and amplitude are two important properties of oscillation. Studied network produces two different modes of…

Molecular Networks · Quantitative Biology 2015-12-21 Rajesh Karmakar

While many event-triggered control strategies are available in the literature, most of them are designed ignoring the presence of measurement noise. As measurement noise is omnipresent in practice and can have detrimental effects, for…

Systems and Control · Electrical Eng. & Systems 2025-05-09 Koen J. A. Scheres , Romain Postoyan , W. P. Maurice H. Heemels

For a class of coupled limit cycle oscillators, we give a condition on a linear coupling operator that is necessary and sufficient for exponential stability of the synchronous solution. We show that with certain modifications our method of…

Adaptation and Self-Organizing Systems · Physics 2010-02-24 Georgi S. Medvedev