Related papers: Practical and Efficient Circle Graph Recognition
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
We provide a fast distributed algorithm for detecting $h$-cycles in the \textsf{Congested Clique} model, whose running time decreases as the number of $h$-cycles in the graph increases. In undirected graphs, constant-round algorithms are…
The online square detection problem is to detect the first occurrence of a square in a string whose characters are provided as input one at a time. Recall that a square is a string that is a concatenation of two identical strings. In this…
A graph is chordal if every cycle of length at least four contains a chord, that is, an edge connecting two nonconsecutive vertices of the cycle. Several classical applications in sparse linear systems, database management, computer vision,…
For a given graph $\mathcal{G}$ of order $n$ with $m$ edges, and a real symmetric matrix associated to the graph, $M\left(\mathcal{G}\right)\in\mathbb{R}^{n\times n}$, the interlacing graph reduction problem is to find a graph…
Grid intersection graphs are the intersection graphs of vertical and horizontal segments in the plane. When the bottom and respectively left endpoints of the vertical and horizontals segments belong to a line with negative slope, the graph…
Computing the diameter of the intersection graphs of objects is a basic problem in computational geometry. Previous works showed that the complexity of computing the diameter mainly depends on the object types: for unit disks and squares in…
We introduce I/O-optimal certifying algorithms for bipartite graphs, as well as for the classes of split, threshold, bipartite chain, and trivially perfect graphs. When the input graph is a class member, the certifying algorithm returns a…
A Meyniel obstruction is an odd cycle with at least five vertices and at most one chord. A graph is Meyniel if and only if it has no Meyniel obstruction as an induced subgraph. Here we give a O(n^2) algorithm that, for any graph, finds…
Given a graph of which the n vertices form a regular two-dimensional grid, and in which each (possibly weighted and/or directed) edge connects a vertex to one of its eight neighbours, the following can be done in O(scan(n)) I/Os, provided M…
Embedding graphs in a geographical or latent space, i.e.\ inferring locations for vertices in Euclidean space or on a smooth manifold or submanifold, is a common task in network analysis, statistical inference, and graph visualization. We…
A permutation graph is a cubic graph admitting a 1-factor M whose complement consists of two chordless cycles. Extending results of Ellingham and of Goldwasser and Zhang, we prove that if e is an edge of M such that every 4-cycle containing…
Min orderings give a vertex ordering characterization, common to some graphs and digraphs such as interval graphs, complements of threshold tolerance graphs (known as co-TT graphs), and two-directional orthogonal ray graphs. An adjusted…
Circle detection over digital images has received considerable attention from the computer vision community over the last few years devoting a tremendous amount of research seeking for an optimal detector. This article presents an algorithm…
We give a linear-time algorithm that checks for isomorphism between two 0-1 matrices that obey the circular-ones property. This algorithm leads to linear-time isomorphism algorithms for related graph classes, including Helly circular-arc…
IC-planar graphs are those graphs that admit a drawing where no two crossed edges share an end-vertex and each edge is crossed at most once. They are a proper subfamily of the 1-planar graphs. Given an embedded IC-planar graph $G$ with $n$…
A graph algorithm is truly subquadratic if it runs in ${\cal O}(m^b)$ time on connected $m$-edge graphs, for some positive $b < 2$. Roditty and Vassilevska Williams (STOC'13) proved that under plausible complexity assumptions, there is no…
The flip graph algorithm is a method for discovering new matrix multiplication schemes by following random walks on a graph. We introduce a version of the flip graph algorithm for matrix multiplication schemes that admit certain symmetries.…
We present improved algorithms for short cycle decomposition of a graph. Short cycle decompositions were introduced in the recent work of Chu et al, and were used to make progress on several questions in graph sparsification. For all…
Finding the common structural features of two molecules is a fundamental task in cheminformatics. Most drugs are small molecules, which can naturally be interpreted as graphs. Hence, the task is formalized as maximum common subgraph…