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The effective interaction between two parallel strands of helical bio-molecules, such as deoxyribose nucleic acids (DNA), is calculated using computer simulations of the "primitive" model of electrolytes. In particular we study a simple…

Biological Physics · Physics 2009-10-31 E. Allahyarov , H. Loewen

We study the energy performance of random linear network coding for time division duplexing channels. We assume a packet erasure channel with nodes that cannot transmit and receive information simultaneously. The sender transmits coded data…

Information Theory · Computer Science 2009-01-05 Daniel E. Lucani , Milica Stojanovic , Muriel Médard

Optimized topology of bi-material acoustic metamaterial lattice plates is studied for maximized locally resonant bandgap of flexural guided waves. Optimized layout of the two relatively stiff and compliant material phases in the design…

Classical Physics · Physics 2016-11-22 Saeid Hedayatrasa , Kazem Abhary , Mohammad Uddin

Homology features of spaces which appear in applications, for instance 3D meshes, are among the most important topological properties of these objects. Given a non-trivial cycle in a homology class, we consider the problem of computing a…

Computational Geometry · Computer Science 2022-03-18 Erin Wolf Chambers , Salman Parsa , Hannah Schreiber

We consider optimal non-sequential designs for a large class of (linear and nonlinear) regression models involving polynomials and rational functions with heteroscedastic noise also given by a polynomial or rational weight function. The…

Computation · Statistics 2011-08-30 Dávid Papp

We use information theoretic achievable rate formulas for the multi-relay channel to study the problem of optimal placement of relay nodes along the straight line joining a source node and a sink node. The achievable rate formulas that we…

Networking and Internet Architecture · Computer Science 2015-03-20 Arpan Chattopadhyay , Abhishek Sinha , Marceau Coupechoux , Anurag Kumar

We investigate a stochastic heat engine based on an over-damped particle diffusing on the positive real axis in an externally driven time-periodic log-harmonic potential. The periodic driving is composed of two isothermal and two adiabatic…

Statistical Mechanics · Physics 2014-05-28 Viktor Holubec

We describe a method for deriving effective low-energy theories of electronic interactions at graphene edges. Our method is applicable to general edges of honeycomb lattices (zigzag, chiral, and even disordered) as long as localized…

Strongly Correlated Electrons · Physics 2013-07-22 Manuel J. Schmidt , Michael Golor , Thomas C. Lang , Stefan Wessel

We introduce a new class of inverse optimization problems in which an input solution is given together with $k$ linear weight functions, and the goal is to modify the weights by the same deviation vector $p$ so that the input solution…

Optimization and Control · Mathematics 2022-01-11 Kristóf Bérczi , Lydia Mirabel Mendoza-Cadena , Kitti Varga

We consider so-called branched transport and variants thereof in two space dimensions. In these models one seeks an optimal transportation network for a given mass transportation task. In two space dimensions, they are closely connected to…

Numerical Analysis · Mathematics 2020-04-01 Carolin Dirks , Benedikt Wirth

In this paper, the problem of choosing the best allocation of excitations and measurements for the identification of a dynamic network is formally stated and analyzed. The best choice will be one that achieves the most accurate…

Optimization and Control · Mathematics 2021-09-21 Eduardo Mapurunga , Alexandre Sanfelici Bazanella

This paper deals with the large-scale behaviour of dynamical optimal transport on $\mathbb{Z}^d$-periodic graphs with general lower semicontinuous and convex energy densities. Our main contribution is a homogenisation result that describes…

Analysis of PDEs · Mathematics 2021-10-29 Peter Gladbach , Eva Kopfer , Jan Maas , Lorenzo Portinale

We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling…

Data Structures and Algorithms · Computer Science 2007-05-23 David R. Karger

We investigate the connections between max-weight approaches and dual subgradient methods for convex optimisation. We find that strong connections exist and we establish a clean, unifying theoretical framework that includes both max-weight…

Optimization and Control · Mathematics 2015-08-27 Víctor Valls , Douglas J. Leith

We present a bipartite network model that captures intermediate stages of optimization by blending the Maximum Entropy approach with Optimal Transport. In this framework, the network's constraints define the total mass each node can supply…

Statistical Mechanics · Physics 2026-02-05 Lorenzo Buffa , Dario Mazzilli , Riccardo Piombo , Fabio Saracco , Giulio Cimini , Aurelio Patelli

This paper addresses the question of optimal phenotypic plasticity as a response to environmental fluctuations while optimizing the cost/benefit ratio, where the cost is energetic expense of plasticity, and benefit is fitness. The…

Populations and Evolution · Quantitative Biology 2012-11-12 Patrick Coquillard , Alexandre Muzy , Francine Diener

The problems of determining the optimal power allocation, within maximum power bounds, to (i) maximize the minimum Shannon capacity, and (ii) minimize the weighted latency are considered. In the first case, the global optima can be achieved…

Systems and Control · Electrical Eng. & Systems 2022-11-15 Shravan Mohan

The transition to electric transportation demands efficient and cost-effective powertrains. Optimizing energy use is crucial for extending range and reducing expenses. However, comparing inverter and motor efficiency based on inverter…

Systems and Control · Electrical Eng. & Systems 2025-07-08 Christoph Sachs , Fabian Stamer , Jan Allgeier , Duleepa Thrimawithana , Martin Neuburger

Sequence comparison across multiple organisms aids in the detection of regions under selection. However, resource limitations require a prioritization of genomes to be sequenced. This prioritization should be grounded in two considerations:…

Genomics · Quantitative Biology 2007-05-23 Jon D. McAuliffe , Michael I. Jordan , Lior Pachter

A line packing is optimal if its coherence is as small as possible. Most interesting examples of optimal line packings are achieving equality in some of the known lower bounds for coherence. In this paper two infinite families of real and…

Functional Analysis · Mathematics 2022-07-19 Ganzhinov Mikhail