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Related papers: Information Theory and Population Genetics

200 papers

The question of how irreversibility can emerge as a generic phenomena when the underlying mechanical theory is reversible has been a long-standing fundamental problem for both classical and quantum mechanics. We describe a mechanism for the…

Quantum Physics · Physics 2013-09-20 Cozmin Ududec , Nathan Wiebe , Joseph Emerson

Natural selection can create information. In particular, because of the action of natural selection, we can often learn something about an environment by examining local organisms, and vice versa. For example, the characteristics of a…

Populations and Evolution · Quantitative Biology 2025-08-20 Joel R. Peck , David Waxman

The emergence of collective decision in swarms and their coordinated response to complex environments underscore the central role played by social transmission of information. Here, the different possible origins of information flow…

Adaptation and Self-Organizing Systems · Physics 2017-05-23 Mohammad Komareji , Yilun Shang , Roland Bouffanais

Many cultural traits characterizing intelligent behaviors are now thought to be transmitted through statistical learning, motivating us to study its effects on cultural evolution. We conduct a large-scale music data analysis and observe…

Physics and Society · Physics 2021-09-29 Eita Nakamura

Biological evolution is realised through the same mechanisms of birth and death that underlie change in population density. The deep interdependence between ecology and evolution is well-established, and recent models focus on integrating…

Populations and Evolution · Quantitative Biology 2025-10-14 A. Bradley Duthie , Victor J. Luque

When dealing with evolving or multi-dimensional complex systems, network theory provides with elegant ways of describing their constituting components, through respectively time-varying and multi-layer complex networks. Nevertheless, the…

Physics and Society · Physics 2018-02-13 Massimiliano Zanin , Ernestina Menasalvas , Xiaoqian Sun , Sebastian Wandelt

We analyze a distributed information network in which each node has access to the information contained in a limited set of nodes (its neighborhood) at a given time. A collective computation is carried out in which each node calculates a…

Social and Information Networks · Computer Science 2014-04-18 Antonio Córdoba , Daniel Aguilar-Hidalgo , M. Carmen Lemos

We present a theoretical framework that extends classical information theory to finite and structured systems by redefining redundancy as a fundamental property of information organization rather than inefficiency. In this framework,…

Machine Learning · Computer Science 2025-10-14 Yuda Bi , Ying Zhu , Vince D Calhoun

We propose a unifying picture where the notion of generalized entropy is related to information theory by means of a group-theoretical approach. The group structure comes from the requirement that an entropy be well defined with respect to…

Statistical Mechanics · Physics 2016-04-13 Gabriele Sicuro , Piergiulio Tempesta

Consider a supercritical birth and death process where the children acquire mutations. We study the mutation rates along the ancestral lineages in a sample of size $n$ from the population at time $T$. The mutation rate is time-inhomogenous…

Probability · Mathematics 2024-02-27 Yubo Shuai

The behavior of ecological systems mainly relies on the interactions between the species it involves. We consider the problem of inferring the species interaction network from abundance data. To be relevant, any network inference…

Applications · Statistics 2019-10-29 Raphaëlle Momal , Stéphane Robin , Christophe Ambroise

Infinite population models are important tools for studying population dynamics of evolutionary algorithms. They describe how the distributions of populations change between consecutive generations. In general, infinite population models…

Neural and Evolutionary Computing · Computer Science 2015-09-29 Bo Song , Victor O. K. Li

Molecular phenotypes link genomic information with organismic functions, fitness, and evolution. Quantitative traits are complex phenotypes that depend on multiple genomic loci. In this paper, we study the adaptive evolution of a…

Populations and Evolution · Quantitative Biology 2015-06-19 Torsten Held , Armita Nourmohammad , Michael Lässig

It is known that statistical model selection as well as identification of dynamical equations from available data are both very challenging tasks. Physical systems behave according to their underlying dynamical equations which, in turn, can…

Mathematical Physics · Physics 2017-10-11 Sean Alan Ali , Carlo Cafaro

The necessary information for specifying a complex system may not be completely accessible to us, i.e., to mathematical treatments. This is not to be confounded with the incompleteness of our knowledge about whatever systems or nature,…

Statistical Mechanics · Physics 2007-05-23 Qiuping A. Wang

Flexible information routing fundamentally underlies the function of many biological and artificial networks. Yet, how such systems may specifically communicate and dynamically route information is not well understood. Here we identify a…

Adaptation and Self-Organizing Systems · Physics 2016-07-08 Christoph Kirst , Marc Timme , Demian Battaglia

Motivated by empirical evidence on the interplay between geography, population density and societal interaction, we propose a generative process for the evolution of social structure in cities. Our analytical and simulation results predict…

Physics and Society · Physics 2013-06-12 Wei Pan , Gourab Ghoshal , Coco Krumme , Manuel Cebrian , Alex Pentland

A kinetic approach to the notion of information is proposed, based on Liouville kinetic theory. The general kinetic equation for the evolution of the N-particle information $\mathcal{I}_N$ in a Hamiltonian system of large particle number…

Statistical Mechanics · Physics 2015-03-11 R. A. Treumann , W. Baumjohann

Generative diffusion models showed high success in many fields with a powerful theoretical background. They convert the data distribution to noise and remove the noise back to obtain a similar distribution. Many existing reviews focused on…

Machine Learning · Computer Science 2024-09-19 Melike Nur Yeğin , Mehmet Fatih Amasyalı

We present a stylized model with feedback loops for the evolution of a population's wealth over generations. Individuals have both talent and wealth: talent is a random variable distributed identically for everyone, but wealth is a random…

Computer Science and Game Theory · Computer Science 2022-09-16 Krishna Acharya , Eshwar Ram Arunachaleswaran , Sampath Kannan , Aaron Roth , Juba Ziani