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Nearly 60 years ago Weinberg suggested a criterion for particle "compositeness", which has acquired new life with the discovery of new, exotic hadrons. His idea resonates with model-based intuition. I discuss the role it plays in the…

High Energy Physics - Phenomenology · Physics 2022-09-20 U. van Kolck

Based on the oligomer-world hypothesis we propose an abstract model where the molecular recognition among oligomers is described in the shape space. The origin of life in the oligomer world is regarded as the establishment of a metabolic…

Subcellular Processes · Quantitative Biology 2012-09-21 Tomoaki Nishio , Osamu Narikiyo

This paper explores the idea that information is an essential and distinctive feature of living systems. Unlike non-living systems, living systems actively acquire, process, and use information about their environments to respond to…

Neural systems show a modular and typically also a hierarchical organisation across different levels and across different species. Topology relates to function, but it is also influences dynamics as earlier studies showed its effect on…

Neurons and Cognition · Quantitative Biology 2014-05-15 Marcus Kaiser

The subjective experience of consciousness is at once familiar and yet deeply mysterious. Strategies exploring the top-down mechanisms of conscious thought within the human brain have been unable to produce a generalized explanatory theory…

Neurons and Cognition · Quantitative Biology 2019-07-02 B. S. Bleier

Consciousness is an explicit outcome of brain activity. However, the link between consciousness and the material world remains to be explored. We applied a new logic tool, the non-identity law, to the analysis of the visual dynamics related…

Neurons and Cognition · Quantitative Biology 2023-05-25 Jinsong Meng

Humans have the ability to report the contents of their subjective experience - we can say to each other, "I am aware of X". The decision processes that support these reports about mental contents remain poorly understood. In this article I…

Neurons and Cognition · Quantitative Biology 2019-12-04 Stephen M. Fleming

Recently we presented a concise survey of the formulation of the induction and coinduction principles, and some concepts related to them, in five different fields mathematical fields, hence shedding some light on the precise relation…

Logic in Computer Science · Computer Science 2019-03-14 Moez A. AbdelGawad

Living systems are thermodynamically open but closed in their organization. In other words, even though their material components turn over constantly, a material-independent property persists, which we call organization. Moreover,…

Quantitative Methods · Quantitative Biology 2025-03-07 Pedro Márquez-Zacarías , Andrés Ortiz-Muñoz , Emma P. Bingham

The paper starts with the proposal that the cause of the apparent insolubility of the free-will problem are several popular but strongly metaphysical notions and hypotheses. To reduce the metaphysics, some ideas are borrowed from physics. A…

History and Philosophy of Physics · Physics 2015-05-13 Petr Hajicek

Herein we consider various concepts of entropy as measures of the complexity of phenomena and in so doing encounter a fundamental problem in physics that affects how we understand the nature of reality. In essence the difficulty has to do…

Statistical Mechanics · Physics 2007-05-23 Paolo Allegrini , Martina Giuntoli , Paolo Grigolini , Bruce J. West

Understanding the neural mechanism underlying subjective representation has become a central endeavor in cognitive-neuroscience. In theories of conscious perception, stimulus gaining conscious access is usually considered as a discrete…

Neurons and Cognition · Quantitative Biology 2018-03-28 Moti Salti , Asaf Harel , Sebastien Marti

Biological organisms are composed of numerous interconnected biochemical processes. Diseases occur when normal functionality of these processes is disrupted. Thus, understanding these biochemical processes and their interrelationships is a…

Artificial Intelligence · Computer Science 2014-03-04 Saadat Anwar

The path toward the emergence of life in our biosphere involved several key events allowing for the persistence, reproduction and evolution of molecular systems. All these processes took place in a given environmental context and required…

Disordered Systems and Neural Networks · Physics 2025-04-14 Ricard Solé , Manlio De Domenico

Metabolic networks perform some of the most fundamental functions in living cells, including energy transduction and building block biosynthesis. While these are the best characterized networks in living systems, understanding their…

Molecular Networks · Quantitative Biology 2010-04-05 W. J. Riehl , P. L. Krapivsky , S. Redner , D. Segre

This thesis is a compendium of research which brings together ideas from the fields of Complex Networks and Computational Neuroscience to address two questions regarding neural systems: 1) How the activity of neurons, via synaptic changes,…

Neurons and Cognition · Quantitative Biology 2013-02-19 Samuel Johnson

Living systems continuously transform matter and energy through the chemical processes that constitute their metabolism. The overall metabolic rate of an organism correlates positively with its body mass, however both the exact scaling…

Soft Condensed Matter · Physics 2026-03-19 Efe Ilker , Michael Hinczewski , Xingbo Yang , Frank Jülicher

Percolation theory has been widely used to study phase transitions in complex networked systems. It has also successfully explained several macroscopic phenomena across different fields. Yet, the existent theoretical framework for…

Physics and Society · Physics 2020-12-01 Jiarong Xie , Xiangrong Wang , Ling Feng , Jin-Hua Zhao , Yamir Moreno , Yanqing Hu

Until presently, most approaches for understanding physiological or pathological phenomena have been based on the assumption that these processes start from individual cells, a concept introduced primarily by Virchow in the 19th century.…

Subcellular Processes · Quantitative Biology 2007-11-02 Razvan Tudor Radulescu

A central biological question is how natural organisms are so evolvable (capable of quickly adapting to new environments). A key driver of evolvability is the widespread modularity of biological networks--their organization as functional,…

Populations and Evolution · Quantitative Biology 2015-03-13 Jeff Clune , Jean-Baptiste Mouret , Hod Lipson