Related papers: Algorithms for Jumbled Pattern Matching in Strings
The class of Parikh word representable graphs were recently introduced. In this work, we further develop its general theory beyond the binary alphabet. Our main result shows that this class is equivalent to the class of bipartite…
Motivated by the study of genome rearrangements, the NP-hard Minimum Common String Partition problems asks, given two strings, to split both strings into an identical set of blocks. We consider an extension of this problem to unbalanced…
We consider the problem of finding a sparse multiple of a polynomial. Given f in F[x] of degree d over a field F, and a desired sparsity t, our goal is to determine if there exists a multiple h in F[x] of f such that h has at most t…
Jaccard Similarity is a very common proximity measurement used to compute the similarity between two asymmetric binary vectors. Jaccard Similarity is the ratio between the 1s (Intersection of two vectors) to 1s (Union of two vectors). This…
Nowadays, data is represented by vectors. Retrieving those vectors, among millions and billions, that are similar to a given query is a ubiquitous problem, known as similarity search, of relevance for a wide range of applications.…
We consider the $Parameterized$ $Pattern$ $Matching$ problem, where a pattern $P$ matches some location in a text $\mathsf{T}$ iff there is a one-to-one correspondence between the alphabet symbols of the pattern to those of the text. More…
The Permuted Kernel Problem (PKP) asks to find a permutation of a given vector belonging to the kernel of a given matrix. The PKP is at the basis of PKP-DSS, a post-quantum signature scheme deriving from the identification scheme proposed…
In dictionary learning, also known as sparse coding, the algorithm is given samples of the form $y = Ax$ where $x\in \mathbb{R}^m$ is an unknown random sparse vector and $A$ is an unknown dictionary matrix in $\mathbb{R}^{n\times m}$…
We propose a quantum string comparison method whose main building blocks are a specially designed oracle construction followed by Grover's search algorithm. The purpose of the oracle is to compare all alphabets of the string in parallel.…
Parameterized strings are a generalization of strings in that their characters are drawn from two different alphabets, where one is considered to be the alphabet of static characters and the other to be the alphabet of parameter characters.…
Bille and G{\o}rtz (2011) recently introduced the problem of substring range counting, for which we are asked to store compactly a string $S$ of $n$ characters with integer labels in ([0, u]), such that later, given an interval ([a, b]) and…
Tasks that model the relation between pairs of tokens in a string are a vital part of understanding natural language. Such tasks, in general, require exhaustive pair-wise comparisons of tokens, thus having a quadratic runtime complexity in…
Simon's congruence $\sim_k$ is defined as follows: two words are $\sim_k$-equivalent if they have the same set of subsequences of length at most $k$. We propose an algorithm which computes, given two words $s$ and $t$, the largest $k$ for…
String matching is a fundamental problem in computer science, with critical applications in text retrieval, bioinformatics, and data analysis. Among the numerous solutions that have emerged for this problem in recent decades,…
Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. In the last two…
We describe a substring search problem that arises in group presentation simplification processes. We suggest a two-level searching model: skip and match levels. We give two timestamp algorithms which skip searching parts of the text where…
In the area of pattern avoidability the central role is played by special words called Zimin patterns. The symbols of these patterns are treated as variables and the rank of the pattern is its number of variables. Zimin type of a word $x$…
We introduce a new class of algorithms for finding a short vector in lattices defined by codes of co-dimension $k$ over $\mathbb{Z}_P^d$, where $P$ is prime. The co-dimension $1$ case is solved by exploiting the packing properties of the…
The problem of finding a longest common subsequence of two main sequences with some constraint that must be a substring of the result (STR-IC-LCS) was formulated recently. It is a variant of the constrained longest common subsequence…
In this paper, we define and study the new problem Simultaneous PQ-Ordering. Its input consists of a set of PQ-trees, which represent sets of circular orders of their leaves, together with a set of child-parent relations between these…