Related papers: Algorithms for Jumbled Pattern Matching in Strings

We investigate the computational complexity of deciding whether a given univariate integer polynomial p(x) has a factor q(x) satisfying specific additional constraints. When the only constraint imposed on q(x) is to have a degree smaller…

In this paper, we revisit the much studied problem of Pattern Matching with Swaps (Swap Matching problem, for short). We first present a graph-theoretic model, which opens a new and so far unexplored avenue to solve the problem. Then, using…

Let $S$ be a string of length $n$. In this paper we introduce the notion of \emph{string attractor}: a subset of the string's positions $[1,n]$ such that every distinct substring of $S$ has an occurrence crossing one of the attractor's…

This paper considers vector network coding solutions based on rank-metric codes and subspace codes. The main result of this paper is that vector solutions can significantly reduce the required alphabet size compared to the optimal scalar…

Considering Grover's Search Algorithm (GSA) with the standard diffuser stage applied, we revisit the $3$-qubit unique String Detection Problem (SDP) and extend the algorithm to $4$-qubit SDP with multiple winners. We then investigate…

We study the "set parameterized matching" problem, a generalization of the classical parameterized matching problem introduced by Baker. In set parameterized matching, both the pattern and text are sequences where each position contains a…

The paper considers the problem of finding a given substring in a text. It is known that the complexity of a classical search query in an unordered database is linear in the length of the text and a given substring. At the same time,…

In this paper, we study the problem of optimizing a linear program whose variables are the answers to a conjunctive query. For this we propose the language LP(CQ) for specifying linear programs whose constraints and objective functions…

Countless variants of the Lempel-Ziv compression are widely used in many real-life applications. This paper is concerned with a natural modification of the classical pattern matching problem inspired by the popularity of such compression…

Online string matching is a computational problem involving the search for patterns or substrings in a large text dataset, with the pattern and text being processed sequentially, without prior access to the entire text. Its relevance stems…

Let $\Sigma$ and $\Pi$ be disjoint alphabets of respective size $\sigma$ and $\pi$. Two strings over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there is a bijection $f:\Sigma \cup \Pi \rightarrow \Sigma…

The $k$-mappability problem has two integers parameters $m$ and $k$. For every subword of size $m$ in a text $S$, we wish to report the number of indices in $S$ in which the word occurs with at most $k$ mismatches. The problem was lately…

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

Given a pattern x of length m and a text y of length n, both over an ordered alphabet, the order-preserving pattern matching problem consists in finding all substrings of the text with the same relative order as the pattern. It is an…

Let $\Sigma$ be an alphabet. For two strings $X$, $Y$, and a constrained string $P$ over the alphabet $\Sigma$, the constrained longest common subsequence and substring problem for two strings $X$ and $Y$ with respect to $P$ is to find a…

We present simple and efficient algorithms for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP of size $n$ that represents string $T$, we present an $O(qn)$…

We study distributed algorithms for string matching problem in presence of wildcard characters. Given a string T (a text), we look for all occurrences of another string P (a pattern) as a substring of string T . Each wildcard character in…

Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…

We solve the problems of detecting and counting various forms of regularities in a string represented as a Straight Line Program (SLP). Given an SLP of size $n$ that represents a string $s$ of length $N$, our algorithm compute all runs and…

We propose an SQP algorithm for mathematical programs with vanishing constraints which solves at each iteration a quadratic program with linear vanishing constraints. The algorithm is based on the newly developed concept of $\mathcal…