Related papers: The existence of k-radius sequences
An n-ary k-radius sequence is a finite sequence of elements taken from an alphabet of size n such that any two distinct elements of the alphabet occur within distance k of each other somewhere in the sequence. These sequences were…
Let k be a positive integer. A sequence s over an n-element alphabet A is called a k-radius sequence if every two symbols from A occur in s at distance of at most k. Let f_k(n) denote the length of a shortest k-radius sequence over A. We…
A \emph{$k$-radius sequence} for a graph $G$ is a sequence of vertices of $G$ (typically with repetitions) such that for every edge $uv$ of $G$ vertices $u$ and $v$ appear at least once within distance $k$ in the sequence. The length of a…
Consider a string of $n$ positions, i.e. a discrete string of length $n$. Units of length $k$ are placed at random on this string in such a way that they do not overlap, and as often as possible, i.e. until all spacings between neighboring…
A $k$-modal sequence is a sequence of real numbers that can be partitioned into $k+1$ (possibly empty) monotone sections such that adjacent sections have opposite monotonicities. For every positive integer $k$, we prove that any sequence of…
The investigation of primes in certain arithmetic sequences is one of the fundamental problems in number theory and especially, finding blocks of distinct primes has gained a lot of attention in recent years. In this context, we prove the…
Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…
Given a set of $t$ words of length $n$ over a $k$-letter alphabet, it is proved that there exists a common subsequence among two of them of length at least $\frac{n}{k}+cn^{1-1/(t-k-2)}$, for some $c>0$ depending on $k$ and $t$. This is…
Sequence classification algorithms, such as SVM, require a definition of distance (similarity) measure between two sequences. A commonly used notion of similarity is the number of matches between $k$-mers ($k$-length subsequences) in the…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
For any field k and any integers m,n with 0 <= 2m <= n+1, let W_n be the k-vector space of sequences (x_0,...,x_n), and let H_m be the subset of W_n consisting of the sequences that satisfy a degree-m linear recursion, that is, for which…
For a linear code $C$ of length $n$ with dimension $k$ and minimum distance $d$, it is desirable that the quantity $kd/n$ is large. Given an arbitrary field $\mathbb{F}$, we introduce a novel, but elementary, construction that produces a…
We consider random sub-graphs of a fixed graph $G=(V,E)$ with large minimum degree. We fix a positive integer $k$ and let $G_k$ be the random sub-graph where each $v\in V$ independently chooses $k$ random neighbors, making $kn$ edges in…
A sequence $S=s_{1}s_{2}..._{n}$ is \emph{nonrepetitive} if no two adjacent blocks of $S$ are identical. In 1906 Thue proved that there exist arbitrarily long nonrepetitive sequences over 3-element set of symbols. We study a generalization…
Given \(k\) strings each of length at most $n$, computing the shortest common supersequence of them is a well-known NP-hard problem (when \(k\) is unbounded). On the other hand, when \(k=2\), such a shortest common supersequence can be…
An $(n,k)$ sequence covering array is a set of permutations of $[n]$ such that each sequence of $k$ distinct elements of $[n]$ is a subsequence of at least one of the permutations. An $(n,k)$ sequence covering array is perfect if there is a…
We show that various aspects of k-automatic sequences -- such as having an unbordered factor of length n -- are both decidable and effectively enumerable. As a consequence it follows that many related sequences are either k-automatic or…
Let $G$ be a simple connected graph. For any two vertices $u$ and $v$, let $d(u,v)$ denote the distance between $u$ and $v$ in $G$. A radio-$k$-labeling of $G$ for a fixed positive integer $k$ is a function $f$ which assigns to each vertex…
Consider the space of sequences of k letters ordered lexicographically. We study the set M({\alpha}) of all maximal sequences for which the asymptotic proportions {\alpha} of the letters are prescribed, where a sequence is said to be…