Related papers: DNA waves and water
This work aims to understand the behavior of non-linear waves in the vicinity of a coronal null point. In previous works we have showed that high frequency waves are generated in such magnetic configuration. This paper studies those waves…
The dielectrophoresis method for trapping and attaching nanoscale double-stranded DNA between nanoelectrodes was developed. The method gives a high yield of trapping single or a few molecules only which enables transport measurements at the…
The sequence-dependent structural variability and conformational dynamics of DNA play pivotal roles in many biological milieus, such as in the site-specific binding of transcription factors to target regulatory elements. To better…
In this work we study the information provided by a detector click on the state of an initially excited two level system. By computing the time evolution of the corresponding conditioned probability beyond the rotating wave approximation,…
A theory of condensation and resolubilization of a dilute DNA solution with growing concentration of multivalent cations, N is suggested. It is based on a new theory of screening of a macroion by multivalent cations, which shows that due to…
We construct a theoretical model for the dynamics of a microscale colloidal particle, modeled as an interval, moving horizontally on a DNA-coated surface, modelled as a line coated with springs that can stick to the interval. Averaging over…
A recent surge of discoveries has sparked significant interest in active systems where a particle moves autonomously in resonance with its self-generated wave field, leading to notable wave-mediated effects including new propulsion…
We propose and apply a novel paradigm for characterization of genome data quality, which quantifies the effects of intentional degradation of quality. The rationale is that the higher the initial quality, the more fragile the genome and the…
The diffusion of electronic wave packets in one-dimensional systems with on-site, binary disorder is numerically investigated within the framework of a single-band tight-binding model. Fractal properties are incorporated by assuming that…
Charge transport through a short DNA oligomer (Dickerson dodecamer) in presence of structural fluctuations is investigated using a hybrid computational methodology based on a combination of quantum mechanical electronic structure…
An analysis of a variety of existing experimental data leads to the conclusion on the existence of a resonance mechanism allowing weak magnetic fields to affect biological processes. These fields may either be static magnetic fields…
The bioinformatical methods to detect lateral gene transfer events are mainly based on functional coding DNA characteristics. In this paper, we propose the use of DNA traits not depending on protein coding requirements. We introduce several…
While the statistical mechanical description of DNA has a long tradition, renewed interest in DNA melting from a physics perspective is nourished by measurements of the fluctuation dynamics of local denaturation bubbles by single molecule…
Relativistic quantum theory of induced scattering of 2D Dirac particles by electrostatic field of impurity ion (in the Born approximation) in the doped graphene at the presence of an external electromagnetic radiation field (actually…
A walker is a fluid entity comprising a bouncing droplet coupled to the waves that it generates at the surface of a vibrated bath. Thanks to this coupling, walkers exhibit a series of wave-particle features formerly thought to be exclusive…
A theory is presented for the binding of small molecules such as surfactants to semiflexible polymers. The persistence length is assumed to be large compared to the monomer size but much smaller than the total chain length. Such polymers…
Rogue waves are rapid and unpredictable events of exceptional amplitude reported in various fields, such as oceanography and optics, with much of the interest being targeted towards their physical origins and likelihood of occurrence. Here,…
Zero mode waveguide technology of next generation sequencing demonstrated sequence-dependence of the enzymatic reaction, incorporating a base into the genomic DNA. We show that these experimental results indicate existence of a previously…
Weak Wave Turbulence is a powerful theory to predict statistical observables of diverse relevant physical phenomena, such as ocean waves, magnetohydrodynamics and nonlinear optics. The theory is based upon an asymptotic closure permitted in…
The paper deals with electromagnetic effects associated with a radially symmetric system of progressive surface waves in the deep sea, induced by underwater oscillating sources or by dispersive decay of the initial localized perturbations…