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Graph neural networks (GNNs) have achieved great success in many graph-based tasks. Much work is dedicated to empowering GNNs with the adaptive locality ability, which enables measuring the importance of neighboring nodes to the target node…

Machine Learning · Computer Science 2021-07-01 Haifeng Li , Jun Cao , Jiawei Zhu , Yu Liu , Qing Zhu , Guohua Wu

Recent advances in experimental neuroscience allow, for the first time, non-invasive studies of the white matter tracts in the human central nervous system, thus making available cutting-edge brain anatomical data describing these global…

Quantitative Methods · Quantitative Biology 2008-11-06 Jonathan J. Crofts , Desmond J. Higham

We survey and introduce concepts and tools located at the intersection of information theory and network biology. We show that Shannon's information entropy, compressibility and algorithmic complexity quantify different local and global…

Molecular Networks · Quantitative Biology 2015-12-14 Hector Zenil , Narsis A. Kiani , Jesper Tegnér

Over the past decade network theory has turned out to be a powerful methodology to investigate complex systems of various sorts. Through data analysis, modeling, and simulation quite an unparalleled insight into their structure, function,…

Physics and Society · Physics 2010-07-16 Kimmo Kaski

In this paper, we propose a perturbation framework to measure the robustness of graph properties. Although there are already perturbation methods proposed to tackle this problem, they are limited by the fact that the strength of the…

Social and Information Networks · Computer Science 2019-01-29 Yali Wan , Marina Meila

Graphs can model real-world, complex systems by representing entities and their interactions in terms of nodes and edges. To better exploit the graph structure, graph neural networks have been developed, which learn entity and edge…

Machine Learning · Computer Science 2022-06-06 Tong Liu , Yushan Liu , Marcel Hildebrandt , Mitchell Joblin , Hang Li , Volker Tresp

Graph Neural Networks (GNNs) have become the standard approach for learning and reasoning over relational data, leveraging the message-passing mechanism that iteratively propagates node embeddings through graph structures. While GNNs have…

Machine Learning · Computer Science 2025-01-14 Xiaoyu Li , Yingyu Liang , Zhenmei Shi , Zhao Song , Wei Wang , Jiahao Zhang

Decentralized learning provides an effective framework to train machine learning models with data distributed over arbitrary communication graphs. However, most existing approaches toward decentralized learning disregard the interaction…

Machine Learning · Computer Science 2022-04-14 Yatin Dandi , Anastasia Koloskova , Martin Jaggi , Sebastian U. Stich

Many real networks in social sciences, biological and biomedical sciences or computer science have an inherent structure of simplicial complexes reflecting many-body interactions. Therefore, to analyse topological and dynamical properties…

Algebraic Topology · Mathematics 2020-04-16 Daniel Hernández Serrano , Darío Sánchez Gómez

Graph Neural Networks (GNNs) have attracted increasing attention in recent years and have achieved excellent performance in semi-supervised node classification tasks. The success of most GNNs relies on one fundamental assumption, i.e., the…

Machine Learning · Computer Science 2024-12-03 Junchao Lin , Yuan Wan , Jingwen Xu , Xingchen Qi

Learning continuous-time dynamics on complex networks is crucial for understanding, predicting and controlling complex systems in science and engineering. However, this task is very challenging due to the combinatorial complexities in the…

Social and Information Networks · Computer Science 2020-06-19 Chengxi Zang , Fei Wang

In estimating the complexity of objects, in particular of graphs, it is common practice to rely on graph- and information-theoretic measures. Here, using integer sequences with properties such as Borel normality, we explain how these…

Information Theory · Computer Science 2017-07-12 Hector Zenil , Narsis Kiani , Jesper Tegnér

Whether comparing networks to each other or to random expectation, measuring dissimilarity is essential to understanding the complex phenomena under study. However, determining the structural dissimilarity between networks is an ill-defined…

Social and Information Networks · Computer Science 2018-07-26 Leo Torres , Pablo Suarez-Serrato , Tina Eliassi-Rad

After an acute stroke, accurately estimating stroke severity is crucial for healthcare professionals to effectively manage patient's treatment. Graph theory methods have shown that brain connectivity undergoes frequency-dependent…

Many network analysis and graph learning techniques are based on models of random walks which require to infer transition matrices that formalize the underlying stochastic process in an observed graph. For weighted graphs, it is common to…

Methodology · Statistics 2022-10-28 Vincenzo Perri , Luka V. Petrović , Ingo Scholtes

We initiate the study of computational complexity of graph coverings, aka locally bijective graph homomorphisms, for {\em graphs with semi-edges}. The notion of graph covering is a discretization of coverings between surfaces or topological…

Discrete Mathematics · Computer Science 2025-10-09 Jan Bok , Jiří Fiala , Petr Hliněný , Nikola Jedličková , Jan Kratochvíl

Graph neural networks (GNNs) have achieved tremendous success on multiple graph-based learning tasks by fusing network structure and node features. Modern GNN models are built upon iterative aggregation of neighbor's/proximity features by…

Machine Learning · Computer Science 2021-06-15 Susheel Suresh , Vinith Budde , Jennifer Neville , Pan Li , Jianzhu Ma

Interpreting graph neural networks (GNNs) is difficult because message passing mixes signals and internal channels rarely align with human concepts. We study superposition, the sharing of directions by multiple features, directly in the…

Machine Learning · Computer Science 2026-01-19 Lukas Pertl , Han Xuanyuan , Pietro Liò

Graph clustering aims to partition nodes into distinct clusters based on their similarity, thereby revealing relationships among nodes. Nevertheless, most existing methods do not fully utilize these edge weights. Leveraging edge weights in…

Machine Learning · Computer Science 2026-02-03 Haobing Liu , Yinuo Zhang , Tingting Wang , Ruobing Jiang , Yanwei Yu

One of the most important challenges in network science is to quantify the information encoded in complex network structures. Disentangling randomness from organizational principles is even more demanding when networks have a multiplex…