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Network theory provides tools which are particularly appropriate for assessing the complex interdependencies that characterise our modern connected world. This article presents an introduction to network theory, in a way that doesn't…

Physics and Society · Physics 2020-05-01 Vaiva Vasiliauskaite , Fernando E. Rosas

Genetic regulatory networks are defined by their topology and by a multitude of continuously adjustable parameters. Here we present a class of simple models within which the relative importance of topology vs. interaction strengths becomes…

Molecular Networks · Quantitative Biology 2013-08-02 Mikhail Tikhonov , William Bialek

Information theory is a powerful framework for quantifying complexity, uncertainty, and dynamical structure in time-series data, with widespread applicability across disciplines such as physics, finance, and neuroscience. However, the…

Information Theory · Computer Science 2026-01-26 Annie G. Bryant , Oliver M. Cliff , James M. Shine , Ben D. Fulcher , Joseph T. Lizier

We introduce a new measure of complexity (called spectral complexity) for directed graphs. We start with splitting of the directed graph into its recurrent and non-recurrent parts. We define the spectral complexity metric in terms of the…

Spectral Theory · Mathematics 2018-11-02 Igor Mezić , Vladimir A. Fonoberov , Maria Fonoberova , Tuhin Sahai

While the majority of approaches to the characterization of complex networks has relied on measurements considering only the immediate neighborhood of each network node, valuable information about the network topological properties can be…

Statistical Mechanics · Physics 2015-06-24 Luciano da Fontoura Costa , Filipi Nascimento Silva

Graph neural networks (GNNs) have attracted much attention due to their ability to leverage the intrinsic geometries of the underlying data. Although many different types of GNN models have been developed, with many benchmarking procedures…

A number of network structural characteristics have recently been the subject of particularly intense research, including degree distributions, community structure, and various measures of vertex centrality, to mention only a few. Vertices…

Social and Information Networks · Computer Science 2016-03-23 Igor Trpevski , Tamara Dimitrova , Tommy Boshkovski , Ljupco Kocarev

This paper aims to define, quantify, and analyze the feature complexity that is learned by a DNN. We propose a generic definition for the feature complexity. Given the feature of a certain layer in the DNN, our method disentangles feature…

Machine Learning · Computer Science 2023-12-04 Jie Ren , Mingjie Li , Zexu Liu , Quanshi Zhang

Curvature notions on graphs provide a theoretical description of graph topology, highlighting bottlenecks and denser connected regions. Artifacts of the message passing paradigm in Graph Neural Networks, such as oversmoothing and…

Machine Learning · Computer Science 2026-02-25 Floriano Tori , Lorenzo Bini , Marco Sorbi , Stéphane Marchand-Maillet , Vincent Ginis

Graph theory has been extensively used to investigate brain network topology and its changes in disease cohorts. However, many graph theoretic analysis-based brain network studies focused on the shortest paths or, more generally,…

Neurons and Cognition · Quantitative Biology 2021-04-19 M. Ghanbari , Z. Zhou , L-M. Hsu , Y. Han , Y. Sun , P-T. Yap , H. Zhang , D. Shen

Geometric graphs are a special kind of graph with geometric features, which are vital to model many scientific problems. Unlike generic graphs, geometric graphs often exhibit physical symmetries of translations, rotations, and reflections,…

The brain as an astonishingly remarkable device has been studied from various angles. It is now well known that neurons are the seat of all activities of the brain function. The dynamical properties pertaining to a single neuron and a…

Neurons and Cognition · Quantitative Biology 2007-05-23 I. Mitra

We introduce a flexible setup allowing for a neural network to learn both its size and topology during the course of a standard gradient-based training. The resulting network has the structure of a graph tailored to the particular learning…

Machine Learning · Computer Science 2020-07-16 Romuald A. Janik , Aleksandra Nowak

A central issue of the science of complex systems is the quantitative characterization of complexity. In the present work we address this issue by resorting to information geometry. Actually we propose a constructive way to associate to a -…

Mathematical Physics · Physics 2017-12-19 Roberto Franzosi , Domenico Felice , Stefano Mancini , Marco Pettini

Rigid body interactions are fundamental to numerous scientific disciplines, but remain challenging to simulate due to their abrupt nonlinear nature and sensitivity to complex, often unknown environmental factors. These challenges call for…

Machine Learning · Computer Science 2025-07-28 Amaury Wei , Olga Fink

We introduce the notion of a network's conduciveness, a probabilistically interpretable measure of how the network's structure allows it to be conducive to roaming agents, in certain conditions, from one portion of the network to another.…

Statistical Mechanics · Physics 2010-07-12 Valmir C. Barbosa

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

As a quantification of the main bottleneck to flow over a graph, the network property of conductance plays an important role in the process of synchronization of network-coupled dynamical systems. Diffusive coupling terms serve not only to…

Physics and Society · Physics 2025-10-29 C. Tyler Diggans

Network topology plays a key role in many phenomena, from the spreading of diseases to that of financial crises. Whenever the whole structure of a network is unknown, one must resort to reconstruction methods that identify the least biased…

Data Analysis, Statistics and Probability · Physics 2015-06-09 Rossana Mastrandrea , Tiziano Squartini , Giorgio Fagiolo , Diego Garlaschelli

Noninvasive medical neuroimaging has yielded many discoveries about the brain connectivity. Several substantial techniques mapping morphological, structural and functional brain connectivities were developed to create a comprehensive road…

Machine Learning · Computer Science 2022-09-30 Alaa Bessadok , Mohamed Ali Mahjoub , Islem Rekik
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