English
Related papers

Related papers: Novel statistical ensemble analysis for simulating…

200 papers

Genetic regulatory circuits universally cope with different sources of noise that limit their ability to coordinate input and output signals. In many cases, optimal regulatory performance can be thought to correspond to configurations of…

Molecular Networks · Quantitative Biology 2018-02-19 Andrea Crisanti , Andrea De Martino , Jonathan Fiorentino

Studies on the role of fluctuations in signal propagation and on gene regulation in monoclonal bacterial population have been extensively pursued based on the machinery of two-component system. The bacterial two-component system shows noise…

Molecular Networks · Quantitative Biology 2017-01-10 Tarunendu Mapder , Sudip Chattopadhyay , Suman K Banik

Sequences of events in noise-driven excitable systems with slow variables often show serial correlations among their intervals of events. Here, we employ a master equation for general non-renewal processes to calculate the interval and…

Biological Physics · Physics 2011-05-23 Farzad Farkhooi , Eilif Muller , Martin P. Nawrot

We present a detailed analysis of the dynamical regimes observed in a balanced network of identical Quadratic Integrate-and-Fire (QIF) neurons with a sparse connectivity for homogeneous and heterogeneous in-degree distribution. Depending on…

Neurons and Cognition · Quantitative Biology 2025-05-29 Matteo Di Volo , Marco Segneri , Denis Goldobin , Antonio Politi , Alessandro Torcini

This paper is devoted to provide a theoretical underpinning for ensemble forecasting with rapid fluctuations in body forcing and in boundary conditions. Ensemble averaging principles are proved under suitable `mixing' conditions on random…

Probability · Mathematics 2012-07-26 Wei Wang , Jian Ren , Jinqiao Duan , Guowei He

We study the spike statistics of neurons in a network with dynamically balanced excitation and inhibition. Our model, intended to represent a generic cortical column, comprises randomly connected excitatory and inhibitory leaky…

Neurons and Cognition · Quantitative Biology 2007-05-23 Alexander Lerchner , Cristina Ursta , John Hertz , Mandana Ahmadi , Pauline Ruffiot

Recurrent networks of dynamic elements frequently exhibit emergent collective oscillations, which can display substantial regularity even when the individual elements are considerably noisy. How noise-induced dynamics at the local level…

Adaptation and Self-Organizing Systems · Physics 2017-01-04 Belen Sancristobal , Beatriz Rebollo , Pol Boada , Maria V. Sanchez-Vives , Jordi Garcia-Ojalvo

This paper presents a fast decorrelated neuro-ensemble with heterogeneous features for large-scale data analytics, where stochastic configuration networks (SCNs) are employed as base learner models and the well-known negative correlation…

Machine Learning · Computer Science 2017-07-06 Dianhui Wang , Caihao Cui

Improving model performance is always the key problem in machine learning including deep learning. However, stand-alone neural networks always suffer from marginal effect when stacking more layers. At the same time, ensemble is an useful…

Computer Vision and Pattern Recognition · Computer Science 2020-05-12 Yuan Gao , Zixiang Cai , Lei Yu

It is well known that the kinetics of an intracellular biochemical network is stochastic. This is due to intrinsic noise arising from the random timing of biochemical reactions in the network as well as due to extrinsic noise stemming from…

Subcellular Processes · Quantitative Biology 2019-06-05 Emma M. Keizer , Bjorn Bastian , Robert W. Smith , Ramon Grima , Christian Fleck

Training recurrent neuronal networks consisting of excitatory (E) and inhibitory (I) units with additive noise for working memory computation slows and diversifies inhibitory timescales, leading to improved task performance that is…

Neurons and Cognition · Quantitative Biology 2025-12-19 Thiparat Chotibut , Oleg Evnin , Weerawit Horinouchi

Cells sense their surrounding by employing intracellular signaling pathways that transmit hormonal signals from the cell membrane to the nucleus. TGF-$\beta$/SMAD signaling encodes various cell fates, controls tissue homeostasis and is…

Molecular Networks · Quantitative Biology 2022-10-12 Niklas Kolbe , Lorenz Hexemer , Lukas-Malte Bammert , Alexander Loewer , Mária Lukáčová-Medviďová , Stefan Legewie

Cortical circuits exhibit high levels of response diversity, even across apparently uniform neuronal populations. While emerging data-driven approaches exploit this heterogeneity to infer effective models of cortical circuit computation…

Neurons and Cognition · Quantitative Biology 2025-11-06 Mohammadreza Soltanipour , Stefan Treue , Fred Wolf

Neurons in the nervous system are submitted to distinct sources of noise, such as ionic-channel and synaptic noise, which introduces variability in their responses to repeated presentations of identical stimuli. This motivates the use of…

We theoretically describe how weak signals may be efficiently transmitted throughout more than one frequency range in noisy excitable media by kind of stochastic multiresonance. This serves us here to reinterpret recent experiments in…

Data Analysis, Statistics and Probability · Physics 2015-05-27 J. J. Torres , J. Marro , J. F. Mejias

NF-{\kappa}B, one of key regulators of inflammation, apoptosis, and differentiation, was found to have noisy oscillatory shuttling between the nucleus and the cytoplasm in single cells when cells are stimulated by cytokine TNF{\alpha}. We…

Molecular Networks · Quantitative Biology 2010-10-11 Jaewook Joo

We present a simple analytical tool which gives an approximate insight into the stationary behavior of nonlinear systems undergoing the influence of a weak and rapid noise from one dominating source, e.g. the kinetic equations describing a…

Quantitative Methods · Quantitative Biology 2008-08-13 Anna Ochab-Marcinek

Kinetics of a balanced network of neurons with a sparse grid of synaptic links is well representable by the stochastic dynamics of a generic neuron subject to an effective shot noise. The rate of delta-pulses of the noise is determined…

Neurons and Cognition · Quantitative Biology 2025-10-31 Maria V. Ageeva , Denis S. Goldobin

The dynamics of cellular chemical reactions are variable due to stochastic noise from intrinsic and extrinsic sources. The intrinsic noise is the intracellular fluctuations of molecular copy numbers caused by the probabilistic encounter of…

Systems and Control · Electrical Eng. & Systems 2023-01-13 Yuta Sakurai , Yutaka Hori

Large networks of sparsely coupled, excitatory and inhibitory cells occur throughout the brain. A striking feature of these networks is that they are chaotic. How does this chaos manifest in the neural code? Specifically, how variable are…

Neurons and Cognition · Quantitative Biology 2014-02-25 Guillaume Lajoie , Jean-Philippe Thivierge , Eric Shea-Brown