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A common objective in the analysis of tabular data is estimating the conditional distribution (in contrast to only producing predictions) of a set of "outcome" variables given a set of "covariates", which is sometimes referred to as the…
In this work, we present a new approach to analyze the gradient flow for a positive semi-definite matrix denoising problem in an extensive-rank and high-dimensional regime. We use recent linear pencil techniques of random matrix theory to…
Many important physical problems, such as fluid structure interaction or conjugate heat transfer, require numerical methods that compute boundary derivatives or fluxes to high accuracy. This paper proposes a novel alternative to calculating…
We define notions of differentiability for maps from and to the space of persistence barcodes. Inspired by the theory of diffeological spaces, the proposed framework uses lifts to the space of ordered barcodes, from which derivatives can be…
I discuss the relation of Hochschild cohomology to the physical states in the closed topological string. This allows a notion of deformation intrinsic to the derived category. I use this to identify deformations of a quiver gauge theory…
We introduce tropical complexes, as an enrichment of the dual complex of a degeneration with additional data from non-transverse intersection numbers. We define cycles, divisors, and linear equivalence on tropical complexes, analogous both…
New methods for $D$-decomposition analysis are presented. They are based on topology of real algebraic varieties and computational real algebraic geometry. The estimate of number of root invariant regions for polynomial parametric families…
By extending the breadth first search algorithm to any d-type critical or subcritical irreducible branching forest, we show that such forests may be encoded through d independent, integer valued, d-dimensional random walks. An application…
Phylogenetic trees are simple models of evolutionary processes. They describe conditionally independent divergent evolution of taxa from common ancestors. Phylogenetic trees commonly do not have enough flexibility to adequately model all…
Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…
We study the notion of degeneration for affine schemes associated to systems of algebraic differential equations with coefficients in the fraction field of a multivariate formal power series ring. In order to do this, we use an integral…
Large deviation principles and related results are given for a class of Markov chains associated to the "leaves" in random recursive trees and preferential attachment random graphs, as well as the "cherries" in Yule trees. In particular,…
Phylogenetic trees constitute an interesting class of objects for stochastic processes due to the non-standard nature of the space they inhabit. In particular, many statistical applications require the construction of Markov processes on…
We extend classical results on simple varieties of trees (asymptotic enumeration, average behavior of tree parameters) to trees counted by their number of leaves. Motivated by genome comparison of related species, we then apply these…
In the paper "Deformation theory of abelian categories", the last two authors proved that an abelian category with enough injectives can be reconstructed as the category of finitely presented modules over the category of its injective…
We give formulas for the degrees of the spaces of foliations in P2 with a dicritical singularity of prescribed order. Blowing up such singularity induces, generically, a foliation with all but finitely many leaves transversal to the…
A class of linear degenerate elliptic equations inspired by nonlinear diffusions of image processing is considered. It is characterized by an interior degeneration of the diffusion coefficient. It is shown that no particularly natural,…
For a recollement $(\mathcal{D}B,\mathcal{D}A,\mathcal{D}C)$ of derived categories of algebras, we investigate when the functor $j^*:\mathcal{D}A\rightarrow\mathcal{D}C$ is an eventually homological isomorphism. In this context, we compare…
The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…
Optimising probabilistic models is a well-studied field in statistics. However, its connection with the training of generative models remains largely under-explored. In this paper, we show that the evolution of time-varying generative…