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We present iGENE, a fully-differentiable TensorFlow implementation of the electromagnetic local nonlinear gyrokinetic model, which allows us to compute gradients of any simulation output with respect to any input via automatic…
Cardinality potentials are a generally useful class of high order potential that affect probabilities based on how many of D binary variables are active. Maximum a posteriori (MAP) inference for cardinality potential models is…
We extend Edmonds' Branching Theorem to locally finite infinite digraphs. As examples of Oxley or Aharoni and Thomassen show, this cannot be done using ordinary arborescences, whose underlying graphs are trees. Instead we introduce the…
Optimal transport theory has been a powerful tool for the analysis of parabolic equationsviewed as gradient flows of volume forms according to suitable transportation metrics.In this paper, we present an example of gradient flows for closed…
In this paper, we prove Thomae's formula for a triple covering of $\bold P^1$ with arbitrary index. This formula gives a relation between theta constants, determinants of period integrals and the difference products of branch points. To…
Phylogenetic networks are rooted acyclic directed graphs in which the leaves are identified with members of a set X of species. The cluster of a vertex is the set of leaves that are descendants of the vertex. A network is "distinct-cluster"…
Regular tree grammars and regular path expressions constitute core constructs widely used in programming languages and type systems. Nevertheless, there has been little research so far on reasoning frameworks for path expressions where node…
In this paper we provide sufficient conditions for maps of vector bundles on smooth projective varieties to be uniquely determined by their degeneracy schemes. We then specialize to holomorphic distributions and foliations. In particular,…
We present a new paradigm for Neural ODE algorithms, called ODEtoODE, where time-dependent parameters of the main flow evolve according to a matrix flow on the orthogonal group O(d). This nested system of two flows, where the parameter-flow…
While normalizing flows have led to significant advances in modeling high-dimensional continuous distributions, their applicability to discrete distributions remains unknown. In this paper, we show that flows can in fact be extended to…
In networks that grow by isotropic redirection (IR), a new node selects an initial target node uniformly at random and attaches to a randomly chosen neighbor of the target. The emerging networks exhibit leaf proliferation, in which the…
The reconstruction of large phylogenetic trees from data that violates clocklike evolution (or as a supertree constructed from any m input trees) raises a difficult question for biologists - how can one assign relative dates to the vertices…
This is essentially an illustration for the general technology of homotopical enhancements developed recently in arxiv:2409.17489. We take the derived category of an abelian category, and we look at the full subcategory spanned by complexes…
This paper presents a batch classifier that has been improved from the earlier version and fixed a mistake in the earlier paper. Two important changes have been made. Each category is represented by a classifier, where each classifier…
Through appropriate projections of an exact renormalization group equation, we study fixed points, critical exponents and nontrivial renormalization group flows in scalar field theories in $2<d<4$. The standard upper critical dimensions…
We study nontrivial entropy invariants in the class of parabolic flows on homogeneous spaces, quasi-unipotent flows. We show that topological complexity (ie, slow entropy) can be computed directly from the Jordan block structure of the…
We present a microscopic index formula for the degeneracy of dyons in four-dimensional N=4 string theory. This counting formula is manifestly symmetric under the duality group, and its asymptotic growth reproduces the macroscopic…
Gradients of probabilistic model likelihoods with respect to their parameters are essential for modern computational statistics and machine learning. These calculations are readily available for arbitrary models via automatic…
We compute branching ratios of $B\to K\pi$ decays in the framework of perturbative QCD factorization theorem. Decay amplitudes are classified into the topologies of tree, penguin and annihilation, all of which contain both factorizable and…
In this paper, we investigate the structural properties of trees and bipartite graphs through the lens of topological indices and combinatorial graph theory. We focus on the First and Second Hyper-Zagreb indices, $HM_1(G)$ and $HM_2(G)$,…