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Directed acyclic graphs (DAGs) are a class of graphs commonly used in practice, with examples that include electronic circuits, Bayesian networks, and neural architectures. While many effective encoders exist for DAGs, it remains…
Graphical (Linear) Algebra is a family of diagrammatic languages allowing to reason about different kinds of subsets of vector spaces compositionally. It has been used to model various application domains, from signal-flow graphs to Petri…
Directed acyclic graphs whose nodes are all the divisors of a positive integer $n$ and arcs $(a,b)$ defined by $a$ divides $b$ are considered. Fourteen graph invariants such as order, size, and the number of paths are investigated for two…
Directed acyclic graphs (DAGs) are commonly used to model causal relationships among random variables. In general, learning the DAG structure is both computationally and statistically challenging. Moreover, without additional information,…
Analogous to regular string and tree languages, regular languages of directed acyclic graphs (DAGs) are defined in the literature. Although called regular, those DAG-languages are more powerful and, consequently, standard problems have a…
A cut of a graph can be represented in many different ways. Here we propose to represent a cut through a ``relation tree'', which is a spanning tree with signed edges. We show that this picture helps to classify the main greedy heuristics…
Finding the origin of short phrases propagating through the web has been formalized by Leskovec et al. [ACM SIGKDD 2009] as DAG Partitioning: given an arc-weighted directed acyclic graph on $n$ vertices and $m$ arcs, delete arcs with total…
Estimating the structure of directed acyclic graphs (DAGs, also known as Bayesian networks) is a challenging problem since the search space of DAGs is combinatorial and scales superexponentially with the number of nodes. Existing approaches…
Inspired by distributed algorithms, we introduce a new class of finite graph automata that recognize precisely the graph languages definable in monadic second-order logic. For the cases of words and trees, it has been long known that the…
A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…
Graphs are a natural representation of data from various contexts, such as social connections, the web, road networks, and many more. In the last decades, many of these networks have become enormous, requiring efficient algorithms to cut…
Algorithmic extension problems of partial graph representations such as planar graph drawings or geometric intersection representations are of growing interest in topological graph theory and graph drawing. In such an extension problem, we…
Semantic parses are directed acyclic graphs (DAGs), so semantic parsing should be modeled as graph prediction. But predicting graphs presents difficult technical challenges, so it is simpler and more common to predict the linearized graphs…
There has been a growing interest in causal learning in recent years. Commonly used representations of causal structures, including Bayesian networks and structural equation models (SEM), take the form of directed acyclic graphs (DAGs). We…
Series-parallel (SP) graphs are binary edge-labeled graphs with a designated source and target vertex, built using serial and parallel composition. A set of graphs is recognizable if membership depends only on its image under a homomorphism…
We propose the use of hyperedge replacement graph grammars for factor graphs, or factor graph grammars (FGGs) for short. FGGs generate sets of factor graphs and can describe a more general class of models than plate notation, dynamic…
Graph modification problems are computational tasks where the goal is to change an input graph $G$ using operations from a fixed set, in order to make the resulting graph satisfy a target property, which usually entails membership to a…
An encoding of directed acyclic graphs (DAGs) on labeled vertices is proposed, which is a generalisation of the Pr\"ufer code for labeled trees, if a certain orienation on the edges of the tree is introduced. Hence it is shown that the…
As opposed to natural languages, source code understanding is influenced by grammatical relationships between tokens regardless of their identifier name. Graph representations of source code such as Abstract Syntax Tree (AST) can capture…
Cell formation is a critical step in the design of cellular manufacturing systems. Recently, it was tackled using a cut-based-graph-partitioning model. This model meets real-life production systems requirements as it uses the actual amount…