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The formation of nano-hillocks on CaF2 crystal surfaces by individual ion impact has been studied using medium energy (3 and 5 MeV) highly charged ions (Xe19+ to Xe30+) as well as swift (kinetic energies between 12 and 58 MeV) heavy ions.…

Predicting interactions between biomolecules, such as protein-protein complexes, remains a challenging problem. Despite the many advancements done so far, the performances of docking protocols are deeply dependent on their capability of…

Biomolecules · Quantitative Biology 2025-08-19 Greta Grassmann , Lorenzo Di Rienzo , Giancarlo Ruocco , Mattia Miotto , Edoardo Milanetti

The design of hybrid peptide-solid interfaces for nanotechnological applications such as biomolecular nanoarrays requires a deep understanding of the basic mechanisms of peptide binding and assembly at solid substrates. Here we show by…

Mesoscale and Nanoscale Physics · Physics 2011-07-07 Michael Bachmann , Karsten Goede , Annette G. Beck-Sickinger , Marius Grundmann , Anders Irbäck , Wolfhard Janke

The folding of the cholesterol trapping apolipoprotein A1 in aqueous solution at increasing ionic strength is studied using atomically detailed molecular dynamics simulations. We calculate various structural properties to characterize the…

Soft Condensed Matter · Physics 2014-06-12 M. A. Balderas Altamirano , A. Gama Goicochea , E. Pérez

We present a thermodynamically consistent mesoscopic model of protein adsorption at liquid-solid interfaces. First describing the equilibrium state under varying protein concentration of the solution and binding conditions, we predict a…

Soft Condensed Matter · Physics 2016-08-31 Gergely J. Szollosi , Imre Derenyi , Janos Voros

Interactions between surfaces and proteins occur in many vital processes and are crucial in biotechnology: the ability to control specific interactions is essential in fields like biomaterials, biomedical implants and biosensors. In the…

Computational Physics · Physics 2016-04-20 Christopher D. Cooper , Lorena A. Barba

Unstructured proteins can modulate cellular responses to environmental conditions by undergoing coil-globule transitions and phase separation. However, the molecular mechanisms of these phenomena still need to be fully understood. Here, we…

Soft Condensed Matter · Physics 2023-06-28 Bernat Durà Faulí , Valentino Bianco , Giancarlo Franzese

Hybrid organic/inorganic interfaces have been widely reported to host emergent properties that go beyond those of their single constituents. Coupling molecules to the recently discovered topological insulators, which possess a linearly…

Materials Science · Physics 2016-01-20 Paolo Sessi , Thomas Bathon , Konstantin K. Kokh , Oleg E. Tereshchenko , Matthias Bode

This paper aims to elucidate the role of interface energy anisotropy in orientation selection during nucleation of new grains in a polycrystalline film growth. An assessment of (heterogeneous) nucleation probability as function of…

Materials Science · Physics 2023-10-11 Martin Minar , Nele Moelans

Folding and aggregation of proteins, the interaction between proteins and membranes, as well as the adsorption of organic soft matter to inorganic solid substrates belong to the most interesting challenges in understanding structure and…

Soft Condensed Matter · Physics 2007-12-06 Michael Bachmann , Wolfhard Janke

Statistical analysis of protein-protein interactions shows anomalously high frequency of homodimers [Ispolatov, I., et al. (2005) Nucleic Acids Res 33, 3629-35]. Furthermore, recent findings [Wright, C.F., et al. (2005) Nature 438, 878-81]…

Biomolecules · Quantitative Biology 2007-05-23 D. B. Lyjatsky , E. I. Shakhnovich

Continuum or hybrid modeling of bilayer membrane morphological dynamics induced by embedded proteins necessitates the identification of protein-membrane interfaces and coupling of deformations of two surfaces. In this article we developed…

Soft Condensed Matter · Physics 2020-06-29 Y. C. Zhou , David Argudo , Frank Marcoline , Michael Grabe

Electrokinetic force has been the major choice for driving the translocation of molecules through a nanopore. However, the use of this approach is limited by an uncontrollable translocation speed, resulting in non-uniform conductance…

Applied Physics · Physics 2024-04-22 Jianxin Yang , Tianle Pan , Zhenming Xie , Wu Yuan , Ho-Pui Ho

We develop a multi-scale approach to simulate hydrated nanobio systems under realistic condi- tions (e.g., nanoparticles and protein solutions at physiological conditions over time-scales up to hours). We combine atomistic simulations of…

Soft Condensed Matter · Physics 2017-07-05 Oriol Vilanova , Valentino Bianco , Giancarlo Franzese

The local adsorption geometries of the (2x2)-N and the (sqrt(3)x sqrt(3))R30^o -N phases on the Ru(0001) surface are determined by analyzing low-energy electron diffraction (LEED) intensity data. For both phases, nitrogen occupies the…

Materials Science · Physics 2009-10-28 S. Schwegmann , A. P. Seitsonen , H. Dietrich , H. Bludau , H. Over , K. Jacobi , G. Ertl

We experimentally discovered that Al2O3 and MgO exhibit well-pronounced nanometric modifications on the surfaces when irradiated under grazing incidence with 23 MeV I beam, in contrast to normal incidence irradiation with the same ion beam…

We have successfully obtained a ZnO/ZnS heterostructure by heating a ZnS(001) single crystal in a controlled impurities-free oxygen atmosphere. Combining X-ray photoelectron spectroscopy (XPS), and atomic force microscopy (AFM), we explore…

Materials Science · Physics 2026-01-21 P. R. A de Oliveira , I. Coelho , G. Felix , P. Venezuela , F. Stavale

Functionality of living cells is inherently linked to subunits with dimensions on the nanoscale. In case of osteoblasts the cell surface plays a particularly important role for adhesion and spreading which are crucial properties with regard…

Biological Physics · Physics 2020-11-30 C. Voelkner , M. Wendt , R. Lange , M. Ulbrich , M. Gruening , S. Staehlke , J. B. Nebe , I. Barke , S. Speller

We study the adhesion of poly(3-hexylthiophene) on nanostructured titania surface in vacuo by means of model potential molecular dynamics. We generate large scale atomistic models of nanostructured titania surfaces (consisting of spherical…

Materials Science · Physics 2010-06-30 Claudio Melis , Alessandro Mattoni , Luciano Colombo

The one-photon absorption cross section of nanocrystals (NCs) of the inorganic perovskite CsPbBr$_{3}$ is studied theoretically using a multiband $\mathbf{k}\cdot\mathbf{p}$ envelope-function model combined with a treatment of intercarrier…

Mesoscale and Nanoscale Physics · Physics 2020-05-11 T. P. T. Nguyen , S. A. Blundell , C. Guet
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