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We study the unsorted database search problem with items $N$ from the viewpoint of unitary discrimination. Instead of considering the famous $O(\sqrt{N})$ Grover's the bounded-error algorithm for the original problem, we seek for the…

Quantum Physics · Physics 2009-11-13 Xiaodi Wu , Runyao Duan

In the absence of governing equations, dimensional analysis is a robust technique for extracting insights and finding symmetries in physical systems. Given measurement variables and parameters, the Buckingham Pi theorem provides a procedure…

Machine Learning · Computer Science 2022-02-11 Joseph Bakarji , Jared Callaham , Steven L. Brunton , J. Nathan Kutz

Dimensionality reduction is a popular preprocessing and a widely used tool in data mining. Transparency, which is usually achieved by means of explanations, is nowadays a widely accepted and crucial requirement of machine learning based…

Machine Learning · Computer Science 2023-02-23 André Artelt , Alexander Schulz , Barbara Hammer

The overwhelming presence of categorical/sequential data in diverse domains emphasizes the importance of sequence mining. The challenging nature of sequences proves the need for continuing research to find a more accurate and faster…

Machine Learning · Computer Science 2022-04-26 Hadi Jahanshahi , Mustafa Gokce Baydogan

The classification of DNA sequences is a key research area in bioinformatics as it enables researchers to conduct genomic analysis and detect possible diseases. In this paper, three state-of-the-art algorithms, namely Convolutional Neural…

Other Quantitative Biology · Quantitative Biology 2020-11-03 Xiangxie Zhang , Ben Beinke , Berlian Al Kindhi , Marco Wiering

Performing analytical tasks over graph data has become increasingly interesting due to the ubiquity and large availability of relational information. However, unlike images or sentences, there is no notion of sequence in networks. Nodes…

Neural and Evolutionary Computing · Computer Science 2020-10-28 Matheus Nunes , Gisele L. Pappa

We study changes in metrics that are defined on a cartesian product of trees. Such metrics occur naturally in many practical applications, where a global metric (such as revenue) can be broken down along several hierarchical dimensions…

Databases · Computer Science 2017-03-24 Matthias Ruhl , Mukund Sundararajan , Qiqi Yan

Identifying conflicting requirements is a key challenge in software requirement engineering, often overlooked in automated solutions. Most existing approaches rely on handcrafted rules or struggle to generalize across different domains. In…

Software Engineering · Computer Science 2025-07-16 Garima Malik , Mucahit Cevik , Ayse Basar , Devang Parikh

We focus on low-dimensional non-metric search, where tree-based approaches permit efficient and accurate retrieval while having short indexing time. These methods rely on space partitioning and require a pruning rule to avoid visiting…

Information Retrieval · Computer Science 2019-10-09 Leonid Boytsov , Eric Nyberg

Multidimensional scaling is a statistical process that aims to embed high dimensional data into a lower-dimensional space; this process is often used for the purpose of data visualisation. Common multidimensional scaling algorithms tend to…

Machine Learning · Computer Science 2022-02-25 Pierre Lambert , Cyril de Bodt , Michel Verleysen , John Lee

Motivated by applications in computer vision and databases, we introduce and study the Simultaneous Nearest Neighbor Search (SNN) problem. Given a set of data points, the goal of SNN is to design a data structure that, given a collection of…

Data Structures and Algorithms · Computer Science 2016-04-11 Piotr Indyk , Robert Kleinberg , Sepideh Mahabadi , Yang Yuan

Sequences of nucleotides (for DNA and RNA) or amino acids (for proteins) are central objects in biology. Among the most important computational problems is that of sequence alignment, i.e. arranging sequences from different organisms in…

Quantitative Methods · Quantitative Biology 2020-12-08 Anna Paola Muntoni , Andrea Pagnani , Martin Weigt , Francesco Zamponi

The comparison of alternative rankings of a set of items is a general and prominent task in applied statistics. Predictor variables are ranked according to magnitude of association with an outcome, prediction models rank subjects according…

With the growing integration of structured and unstructured data, new methods have emerged for performing similarity searches on vectors while honoring structured attribute constraints, i.e., a process known as Filtering Approximate Nearest…

Databases · Computer Science 2025-09-23 Mocheng Li , Xiao Yan , Baotong Lu , Yue Zhang , James Cheng , Chenhao Ma

Dimensionality reduction methods, also known as projections, are frequently used for exploring multidimensional data in machine learning, data science, and information visualization. Among these, t-SNE and its variants have become very…

Machine Learning · Computer Science 2019-02-22 Mateus Espadoto , Nina S. T. Hirata , Alexandru C. Telea

Edit distance similarity search, also called approximate pattern matching, is a fundamental problem with widespread database applications. The goal of the problem is to preprocess $n$ strings of length $d$, to quickly answer queries $q$ of…

Data Structures and Algorithms · Computer Science 2020-07-10 Samuel McCauley

Dendrograms are a way to represent evolutionary relationships between organisms. Nowadays, these are inferred based on the comparison of genes or protein sequences by taking into account their differences and similarities. The genetic…

Molecular Networks · Quantitative Biology 2019-09-09 Daniel Gamermann , Arnau Montagud , J. Alberto Conejero , Pedro Fernández de Córdoba , Javier F. Urchueguía

We propose a new method for shape recognition and retrieval based on dynamic programming. Our approach uses the dynamic programming algorithm to compute the optimal score and to find the optimal alignment between two strings. First, each…

Computer Vision and Pattern Recognition · Computer Science 2019-05-01 Noreddine Gherabi , Bahaj Mohamed

Fast Nearest Neighbor (NN) search is a fundamental challenge in large-scale data processing and analytics, particularly for analyzing multimedia contents which are often of high dimensionality. Instead of using exact NN search, extensive…

Information Retrieval · Computer Science 2016-05-19 Ji Wan , Sheng Tang , Yongdong Zhang , Jintao Li , Pengcheng Wu , Steven C. H. Hoi

Neural Architecture Search (NAS) methods are widely used in various industries to obtain high quality taskspecific solutions with minimal human intervention. Event Sequences find widespread use in various industrial applications including…

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