English
Related papers

Related papers: Fluctuation Assisted Ejection of DNA From Bacterio…

200 papers

The fluctuation pressure of a lipid-bilayer membrane is important for the stability of lamellar phases and the adhesion of membranes to surfaces. In contrast to many theoretical studies, which predict a decrease of the pressure with the…

Soft Condensed Matter · Physics 2013-07-25 Thorsten Auth , Gerhard Gompper

Optical tweezers allow the measurement of fluctuations at the nano-scale, in particular fluctuations in the end-to-end distance in single molecules. Fluctuation spectra can yield valuable information, but they can easily be contaminated by…

Biological Physics · Physics 2015-09-30 Marco Ribezzi-Crivellari , Anna Alemany , Felix Ritort

Theoretical analysis and fully atomistic molecular dynamics simulations reveal a Brownian ratchet mechanism by which thermal fluctuations drive the net displacement of immiscible liquids confined in channels or pores with micro- or…

Soft Condensed Matter · Physics 2016-04-26 Carlos E. Colosqui , Teng Teng , Amir M. Rahmani

Even in the steady-state, the number of biomolecules in living cells fluctuates dynamically; and the frequency spectrum of this chemical fluctuation carries valuable information about the mechanism and the dynamics of the intracellular…

Biological Physics · Physics 2018-08-21 Sanggeun Song , Gil-Suk Yang , Seong Jun Park , Ji-Hyun Kim , Jaeyoung Sung

Myosin motor proteins drive vigorous steady-state fluctuations in the actin cytoskeleton of cells. Endogenous embedded semiflexible filaments such as microtubules, or added filaments such as single-walled carbon nanotubes are used as novel…

Biological Physics · Physics 2016-06-21 J. Gladrow , N. Fakhri , F. C. MacKintosh , C. F. Schmidt , C. P. Broedersz

Counterintuitively, experiments show that an electromagnetically levitated particle escapes from its trap when the ambient pressure is reduced below a certain level even if the particle's motion is cooled by a resonator-based or…

Quantum Physics · Physics 2019-05-08 Amir M. Jazayeri , Khashayar Mehrany

Thermal fluctuations cause perturbations of fluid-fluid interfaces and highly nonlinear hydrodynamics in multiphase flows. In this work, we develop a novel multiphase smoothed dissipative particle dynamics model. This model accounts for…

We construct a theoretical model for the dynamics of a microscale colloidal particle, modeled as an interval, moving horizontally on a DNA-coated surface, modelled as a line coated with springs that can stick to the interval. Averaging over…

Soft Condensed Matter · Physics 2018-09-28 James P. Lee-Thorp , Miranda Holmes-Cerfon

We compare the spectral properties of long meteorological temperature records with laboratory measurements in small convection cells. Surprisingly, the atmospheric boundary layer sampled on a daily scale shares the statistical properties of…

Disordered Systems and Neural Networks · Physics 2009-10-30 I. M. Jánosi , G. Vattay , A. Harnos

We analyze both the static and dynamic fluctuation spectrum of the red-blood cell in a unified manner, using a simple model of the composite membrane. In this model, the two-dimensional spectrin network that forms the cytoskeleton is…

Soft Condensed Matter · Physics 2007-05-23 N. Gov , A. G. Zilman , S. Safran

Numerical modeling of the edge and scrape-off layer (SOL) must account for atomic processes such as hydrogenic ionization and recombination, charge-exchange, and line radiation. Their reaction rates depend non-linearly on density and…

Plasma Physics · Physics 2026-04-01 Konrad Eder , Wladimir Zholobenko , Andreas Stegmeir , Kaiyu Zhang , Frank Jenko

We investigate the effect of thermal fluctuations on the mechanical properties of nanotubes by employing tools from statistical physics. For 2D sheets it was previously shown that thermal fluctuations effectively renormalize elastic moduli…

Statistical Mechanics · Physics 2023-05-25 Siddhartha Sarkar , Mohamed El Hedi Bahri , Andrej Košmrlj

We apply recent results on the probability distribution for quantum stress tensor fluctuations to the problem of barrier penetration by quantum particles. The probability for large stress tensor fluctuations decreases relatively slowly with…

Quantum Physics · Physics 2018-12-10 Haiyun Huang , L. H. Ford

Time-resolved single-molecule biophysical experiments yield data that contain a wealth of dynamic information, in addition to the equilibrium distributions derived from histograms of the time series. In typical force spectroscopic setups…

Biomolecules · Quantitative Biology 2011-07-14 Michael Hinczewski , Yann von Hansen , Roland R. Netz

DNA supercoiling plays an important role in a variety of cellular processes. The torsional stress related with supercoiling may be also involved in gene regulation through the local structure and dynamics of the double helix. To check this…

Biomolecules · Quantitative Biology 2015-05-19 Alexey K. Mazur

The thermalization of quark-gluon plasma created in heavy-ion collisions is crucial for understanding its behavior as a relativistic fluid and the thermodynamic properties of the Quantum Chromodynamics (QCD). This study investigates the…

Nuclear Theory · Physics 2025-09-19 Yu-Shan Mu , Jing-An Sun , Li Yan , Xu-Guang Huang

A statistical method is developed to estimate the maximum amplitude of the base pair fluctuations in a three dimensional mesoscopic model for nucleic acids. The base pair thermal vibrations around the helix diameter are viewed as a Brownian…

Soft Condensed Matter · Physics 2021-05-20 Marco Zoli

The remarkable accuracy and versatility of single-molecule techniques make possible new measurements that are not feasible in bulk assays. Among these, the precise estimation of folding free energies using fluctuation theorems in…

Biomolecules · Quantitative Biology 2019-12-19 Aurelien Severino , Alvaro Martinez Monge , Paolo Rissone , Felix Ritort

Globular proteins undergo thermal fluctuations in solution, while maintaining an overall well-defined folded structure. In particular, studies have shown that the core structure of globular proteins differs in small, but significant ways…

Active contributions to fluctuations are a direct consequence of metabolic energy consumption in living cells. Such metabolic processes continuously create active forces, which deform the membrane to control motility, proliferation as well…

Biological Physics · Physics 2018-10-02 Hervé Turlier , Timo Betz