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We study a class of growth algorithms for directed graphs that are candidate models for the evolution of genetic regulatory networks. The algorithms involve partial duplication of nodes and their links, together with innovation of new…

Molecular Networks · Quantitative Biology 2007-05-23 D. V. Foster , S. A. Kauffman , J. E. S. Socolar

Evolutionary algorithms are metaheuristic techniques that derive inspiration from the natural process of evolution. They can efficiently solve (generate acceptable quality of solution in reasonable time) complex optimization (NP-Hard)…

Computer Vision and Pattern Recognition · Computer Science 2013-12-20 Anupriya Gogna , Akash Tayal

It is generally accepted that "diversity" is associated with success in evolutionary algorithms. However, diversity is a broad concept that can be measured and defined in a multitude of ways. To date, most evolutionary computation research…

Neural and Evolutionary Computing · Computer Science 2023-01-18 Jose Guadalupe Hernandez , Alexander Lalejini , Emily Dolson

Evolutionary multitasking has recently emerged as a novel paradigm that enables the similarities and/or latent complementarities (if present) between distinct optimization tasks to be exploited in an autonomous manner simply by solving them…

Neural and Evolutionary Computing · Computer Science 2016-07-20 Abhishek Gupta , Yew-Soon Ong

Evolution gave rise to creatures that are arguably more sophisticated than the greatest human-designed systems. This feat has inspired computer scientists since the advent of computing and led to optimization tools that can evolve complex…

Neural and Evolutionary Computing · Computer Science 2020-12-23 Jean-Baptiste Mouret

The computational modeling of genetic regulatory networks is now common place, either by fitting a system to experimental data or by exploring the behaviour of abstract systems with the aim of identifying underlying principles. This paper…

Computational Engineering, Finance, and Science · Computer Science 2013-10-22 Larry Bull

Cellular automata are discrete and computational models thatcan be shown as general models of complexity. They are used in varied applications to derive the generalized behavior of the presented model. In this paper we have took one such…

Neural and Evolutionary Computing · Computer Science 2020-05-14 Karan Nayak

Genetic Algorithms (GA) are a class of metaheuristic global optimization methods inspired by the process of natural selection among individuals in a population. Despite their widespread use, a comprehensive theoretical analysis of these…

Optimization and Control · Mathematics 2025-02-24 Giacomo Borghi , Lorenzo Pareschi

A while ago, the ideas of evolutionary biology inspired computer scientists to develop a thriving nowadays field of evolutionary computation (EC), in general, and genetic algorithms (GA), in particular. At the same time, the directed…

Quantitative Methods · Quantitative Biology 2019-12-09 Alexander Spirov , Ekaterina Myasnikova

This paper presents a new type of genetic algorithm for the set covering problem. It differs from previous evolutionary approaches first because it is an indirect algorithm, i.e. the actual solutions are found by an external decoder…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Uwe Aickelin

The purpose of this paper is to give an introduction to the field of Schema Theory written by a mathematician and for mathematicians. In particular, we endeavor to to highlight areas of the field which might be of interest to a…

Neural and Evolutionary Computing · Computer Science 2021-09-01 David White

Genetic algorithms have played an important role in engineering optimization. Traditional GAs treat each gene separately. However, biophysical studies of gene regulatory networks revealed direct associations between different genes. It…

Neural and Evolutionary Computing · Computer Science 2024-05-01 Zhaoning Shi , Meng Xiang , Zhaoyang Hai , Xiabi Liu , Yan Pei

There is no proof yet of convergence of Genetic Algorithms. We do not supply it too. Instead, we present some thoughts and arguments to convince the Reader, that Genetic Algorithms are essentially bound for success. For this purpose, we…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Marek W. Gutowski

As Evolutionary Dynamics moves from the realm of theory into application, algorithms are needed to move beyond simple models. Yet few such methods exist in the literature. Ecological and physiological factors are known to be central to…

Populations and Evolution · Quantitative Biology 2025-05-20 Bryce Allen Bagley , Navin Khoshnan , Claudia K Petritsch

We introduce Genetic AI, a novel method for multi-objective optimization without external parameters or predefined weights. The method can be applied to all problems that can be formulated in matrix form and allows for a data-less training…

Neural and Evolutionary Computing · Computer Science 2025-05-09 Philipp Wissgott

Neural networks and evolutionary computation have a rich intertwined history. They most commonly appear together when an evolutionary algorithm optimises the parameters and topology of a neural network for reinforcement learning problems,…

Neural and Evolutionary Computing · Computer Science 2016-04-15 Alexander W. Churchill , Siddharth Sigtia , Chrisantha Fernando

Identifying similar documents within extensive volumes of data poses a significant challenge. To tackle this issue, researchers have developed a variety of effective distributed computing techniques. With the advancement of computing power…

Neural and Evolutionary Computing · Computer Science 2025-07-17 Chandrashekar Muniyappa , Eunjin Kim

Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This…

Populations and Evolution · Quantitative Biology 2023-01-18 Eden Tian Hwa Ng , Akira R. Kinjo

Evolutionary algorithms have recently been used to create a wide range of artistic work. In this paper, we propose a new approach for the composition of new images from existing ones, that retain some salient features of the original…

Neural and Evolutionary Computing · Computer Science 2017-03-13 Aneta Neumann , Zygmunt L. Szpak , Wojciech Chojnacki , Frank Neumann

This paper explores the use of genetic algorithms for the design of networks, where the demands on the network fluctuate in time. For varying network constraints, we find the best network using the standard genetic algorithm operators such…

Neural and Evolutionary Computing · Computer Science 2009-11-10 Matthew J. Berryman , Andrew Allison , Derek Abbott
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