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Knotted ribbons form an important topic in knot theory. They have applications in natural sciences, such as cyclic duplex DNA modeling. A flat knotted ribbon can be obtained by gently pulling a knotted ribbon tight so that it becomes flat…
This is an introductory article on high dimensional knots for the beginners. High dimensional knot theory is an exciting field. It is a field of knot theory, which is one of topology and is connected with many ones. In this article we use…
Local sets, a graph structure invariant under local complementation, have been originally introduced in the context of quantum computing for the study of quantum entanglement within the so-called graph state formalism. A local set in a…
The entanglement of open curves in 3-space appears in many physical systems and affects their material properties and function. A new framework in knot theory was introduced recently, that enables to characterize the complexity of…
In this paper, we determine geometric information on slope lengths of a large class of knots in the 3-sphere, based only on diagrammatical properties of the knots. In particular, we show such knots have meridian length strictly less than 4,…
Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…
We show the existence of infinitely many knot exteriors where each of which contains meridional essential surfaces of any genus and (even) number of boundary components. That is, the compact surfaces that have a meridional essential…
The probability of a random polygon (or a ring polymer) having a knot type $K$ should depend on the complexity of the knot $K$. Through computer simulation using knot invariants, we show that the knotting probability decreases exponentially…
The (isothermic) compressibility of lattice knots can be examined as a model of the effects of topology and geometry on the compressibility of ring polymers. In this paper, the compressibility of minimal length lattice knots in the simple…
We define homotopy-theoretic invariants of knots in prime 3-manifolds. Fix a knot J in a prime 3-manifold M. Call a knot K in M concordant to J if it cobounds a properly embedded annulus with J in MxI, and call K J-characteristic if there…
We introduce the notion of slice depth of a 2-knot K, which is the minimal integer n such that K is n-slice. We give an upper bound for the slice depth of the n-twist spin of a classical knot which belongs to several specific classes,…
We study here global and local entanglements of open protein chains by implementing the concept of knotoids. Knotoids have been introduced in 2012 by Vladimir Turaev as a generalization of knots in 3-dimensional space. More precisely,…
The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…
In this paper we examine the relative knotting probabilities in a lattice model of ring polymers confined in a cavity. The model is of a lattice knot of size $n$ in the cubic lattice, confined to a cube of side-length $L$ and with volume…
Nontrivial isometric embeddings for flat metrics (i.e., those which are not just planes in the ambient space) can serve as useful tools in the description of gravity in the embedding gravity approach. Such embeddings can additionally be…
It is known that the Alexander polynomial detects fibered knots and 3-manifolds that fiber over the circle. In this note, we show that when the Alexander polynomial becomes inconclusive, the notion of "knot adjacency", studied in the paper…
Let $K$ be a nontrivial knot. For each $n\in \mathbb{N}$, we prove that the rank of its $n$th iterated Whitehead doubled knot group $\pi_1(S^3 \setminus \operatorname{WD}^n(K))$ is bounded below by $n+1$. As an application, we show that…
A knot in a thickened surface $K$ is a smooth embedding $K:S^1 \rightarrow \Sigma \times [0,1]$, where $\Sigma$ is a closed, connected, orientable surface. There is a bijective correspondence between knots in $S^2 \times [0,1]$ and knots in…
Low-dimensional embeddings are essential for machine learning tasks involving graphs, such as node classification, link prediction, community detection, network visualization, and network compression. Although recent studies have identified…
This paper examines the relationship between the knotting of an embedded surface in $\R^3$ and the knotting of its fold curves, formed by the singular set of projection to a plane. The first result shows that every surface, no matter how…