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The emergence of a complex, large-scale organisation of cosmic matter into the Cosmic Web is a beautiful exemplification of how complexity can be produced by simple initial conditions and simple physical laws. In the epoch of Big Data in…

Cosmology and Nongalactic Astrophysics · Physics 2021-05-12 Franco Vazza

Why are large, complex ecosystems stable? Both theory and simulations of current models predict the onset of instability with growing size and complexity, so for decades it has been conjectured that ecosystems must have some unidentified…

Populations and Evolution · Quantitative Biology 2016-08-11 Samuel Johnson , Virginia Domínguez-García , Luca Donetti , Miguel A. Muñoz

Data-driven analysis of complex networks has been in the focus of research for decades. An important area of research is to study how well real networks can be described with a small selection of metrics, furthermore how well network models…

Social and Information Networks · Computer Science 2022-04-28 Marcell Nagy , Roland Molontay

We propose a generic model of eco-systems, with a {\it hierarchical} food web structure. In our computer simulations we let the eco-system evolve continuously for so long that that we can monitor extinctions as well as speciations over…

Populations and Evolution · Quantitative Biology 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

This paper presents a statistically sound method for using likelihood to assess potential models of network evolution. The method is tested on data from five real networks. Data from the internet autonomous system network, from two photo…

Social and Information Networks · Computer Science 2013-03-28 R. G. Clegg , R. Landa , U. Harder , M. Rio

We consider the concept of mutual information in ecological networks, and use this idea to analyse the Tangled Nature model of co-evolution. We show that this measure of correlation has two distinct behaviours depending on how we define the…

Populations and Evolution · Quantitative Biology 2009-11-02 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

We present a mathematical analysis of the speciation model for food-web structure, which had in previous work been shown to yield a good description of empirical data of food-web topology. The degree distributions of the network are…

Populations and Evolution · Quantitative Biology 2007-05-23 A. G. Rossberg , H. Matsuda , T. Amemiya , K. Itoh

The issue of how to create open-ended evolution in an artificial system is one the open problems in artificial life. This paper examines two of the factors that have some bearing on this issue, using the Tierra artificial life system. {\em…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Russell K. Standish

When dealing with evolving or multi-dimensional complex systems, network theory provides with elegant ways of describing their constituting components, through respectively time-varying and multi-layer complex networks. Nevertheless, the…

Physics and Society · Physics 2018-02-13 Massimiliano Zanin , Ernestina Menasalvas , Xiaoqian Sun , Sebastian Wandelt

One of the central themes in modern ecology is the enduring debate on whether there is a relationship between the complexity of a biological community and its stability. In this paper, we focus on the role of detritus and spatial dispersion…

Populations and Evolution · Quantitative Biology 2014-06-11 Andrzej Pękalski , Janusz Szwabiński

Real-world networks process structured connections since they have non-trivial vertex degree correlation and clustering. Here we propose a toy model of structure formation in real-world weighted network. In our model, a network evolves by…

Physics and Society · Physics 2015-06-26 C. C. Leung , H. F. Chau

Complex network theory has been used to study complex systems. However, many real-life systems involve multiple kinds of objects . They can't be described by simple graphs. In order to provide complete information of these systems, we…

Physics and Society · Physics 2015-11-10 Jin-Li Guo , Xin-Yun Zhu

This paper is an extensive survey of literature on complex network communities and clustering. Complex networks describe a widespread variety of systems in nature and society especially systems composed by a large number of highly…

Social and Information Networks · Computer Science 2015-03-24 Biswajit Saha , Amitabha Mandal , Soumendu Bikas Tripathy , Debaprasad Mukherjee

A complex network is a condensed representation of the relational topological framework of a complex system. A main reason for the existence of such networks is the transmission of items through the entities of these complex systems. Here,…

Physics and Society · Physics 2018-04-18 María Pereda , Ernesto Estrada

The complexity of urban street networks is well accepted to reside in the information space where roads map to nodes and junctions to links between nodes. Assuming that information networks preserve their amount of surprisal on average…

Physics and Society · Physics 2019-12-05 Jerome Benoit , Saif Eddin Jabari

Many methods have been developed for finding the commonalities between different organisms to study their phylogeny. The structure of metabolic networks also reveal valuable insights into metabolic capacity of species as well as into the…

Molecular Networks · Quantitative Biology 2016-04-08 Krishanu Deyasi , Anirban Banerjee , Bony Deb

We derive a composite centrality measure for general weighted and directed complex networks, based on measure standardisation and invariant statistical inheritance schemes. Different schemes generate different intermediate abstract measures…

Methodology · Statistics 2014-01-21 Andreas Joseph , Guanrong Chen

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions but also in the local…

Quantitative Methods · Quantitative Biology 2022-12-23 Tancredi Caruso , Giulio Virginio Clemente , Matthias C Rillig , Diego Garlaschelli

Interactions between units in phyical, biological, technological, and social systems usually give rise to intrincate networks with non-trivial structure, which critically affects the dynamics and properties of the system. The focus of most…

Data Analysis, Statistics and Probability · Physics 2007-05-23 R. Guimera , M. Sales-Pardo , L. A. N. Amaral

Metabolic networks are probably among the most challenging and important biological networks. Their study provides insight into how biological pathways work and how robust a specific organism is against an environment or therapy. Here we…

Physics and Society · Physics 2023-10-06 Pietro Traversa , Guilherme Ferraz de Arruda , Alexei Vazquez , Yamir Moreno
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