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Finding a maximum clique in a given graph is one of the fundamental NP-hard problems. We compare two multi-core thread-parallel adaptations of a state-of-the-art branch and bound algorithm for the maximum clique problem, and provide a novel…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-09-05 Ciaran McCreesh , Patrick Prosser

Finding optimal evolutionary trees from sequence data is typically an intractable problem, and there is usually no way of knowing how close to optimal the best tree from some search truly is. The problem would seem to be particularly acute…

Populations and Evolution · Quantitative Biology 2013-06-07 Dietrich Radel , Andreas Sand , Mike Steel

A graph $G=(V,E)$ is called $(k,\ell)$-full if $G$ contains a subgraph $H=(V,F)$ of $k|V|-\ell$ edges such that, for any non-empty $F' \subseteq F$, $|F'| \leq k|V(F')| - \ell$ holds. Here, $V(F')$ denotes the set of vertices incident to…

Data Structures and Algorithms · Computer Science 2011-03-15 Hiro Ito , Shin-ichi Tanigawa , Yuichi Yoshida

We present an algorithm that allows for find-closest-point and kNN-style traversals of left-balanced k-d trees, without the need for either recursion or software-managed stacks; instead using only current and last previously traversed node…

Data Structures and Algorithms · Computer Science 2022-11-04 Ingo Wald

Searching spatial data is an important operation for scientific simulations which are performed mostly with periodic boundary conditions. An R-Tree is a well known tree data structure used to contain spatial objects and it is capable of…

Data Structures and Algorithms · Computer Science 2017-12-11 Toru Niina

Let $T$ be a binary search tree. We prove two results about the behavior of the Splay algorithm (Sleator and Tarjan 1985). Our first result is that inserting keys into an empty binary search tree via splaying in the order of either $T$'s…

Data Structures and Algorithms · Computer Science 2019-07-16 Caleb C. Levy , Robert E. Tarjan

We consider an index data structure for similar strings. The generalized suffix tree can be a solution for this. The generalized suffix tree of two strings $A$ and $B$ is a compacted trie representing all suffixes in $A$ and $B$. It has…

Data Structures and Algorithms · Computer Science 2013-05-09 Joong Chae Na , Heejin Park , Maxime Crochemore , Jan Holub , Costas S. Iliopoulos , Laurent Mouchard , Kunsoo Park

Algorithms for learning decision trees often include heuristic local-search operations such as (1) adjusting the threshold of a cut or (2) also exchanging the feature of that cut. We study minimizing the number of classification errors by…

Machine Learning · Computer Science 2025-10-15 Juha Harviainen , Frank Sommer , Manuel Sorge

The $k$d-tree is one of the most widely used data structures to manage multi-dimensional data. Due to the ever-growing data volume, it is imperative to consider parallelism in $k$d-trees. However, we observed challenges in existing parallel…

Data Structures and Algorithms · Computer Science 2025-01-08 Ziyang Men , Zheqi Shen , Yan Gu , Yihan Sun

The dynamic partial sorting problem asks for an algorithm that maintains lists of numbers under the link, cut and change value operations, and queries the sorted sequence of the $k$ least numbers in one of the lists. We first solve the…

Data Structures and Algorithms · Computer Science 2014-04-21 Jiamou Liu , Kostya Ross

The minimum linear arrangement problem on a network consists of finding the minimum sum of edge lengths that can be achieved when the vertices are arranged linearly. Although there are algorithms to solve this problem on trees in polynomial…

Data Analysis, Statistics and Probability · Physics 2017-12-14 Juan Luis Esteban , Ramon Ferrer-i-Cancho , Carlos Gómez-Rodríguez

The rotation search problem aims to find a 3D rotation that best aligns a given number of point pairs. To induce robustness against outliers for rotation search, prior work considers truncated least-squares (TLS), which is a non-convex…

Optimization and Control · Mathematics 2022-07-22 Liangzu Peng , Mahyar Fazlyab , René Vidal

Flat combining is a concurrency threaded technique whereby one thread performs all the operations in batch by scanning a queue of operations to-be-done and performing them together. Flat combining makes sense as long as k operations each…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-25 Sergio Sainz-Palacios

Machine Learning Techniques, properly combined with Data Structures, have resulted in Learned Static Indexes, innovative and powerful tools that speed-up Binary Search, with the use of additional space with respect to the table being…

Information Retrieval · Computer Science 2022-09-20 Domenico Amato , Giosuè Lo Bosco , Raffaele Giancarlo

We present a new approximation algorithm for the treewidth problem which finds an upper bound on the treewidth and constructs a corresponding tree decomposition as well. Our algorithm is a faster variation of Reed's classical algorithm. For…

Data Structures and Algorithms · Computer Science 2022-06-24 Mahdi Belbasi , Martin Fürer

A spanning tree of an unweighted graph is a minimum average stretch spanning tree if it minimizes the ratio of sum of the distances in the tree between the end vertices of the graph edges and the number of graph edges. We consider the…

Data Structures and Algorithms · Computer Science 2014-04-15 N. S. Narayanaswamy , G. Ramakrishna

We show how to construct a dynamic ordered dictionary, supporting insert/delete/rank/select on a set of $n$ elements from a universe of size $U$, that achieves the optimal amortized expected time complexity of $O(1 + \log n / \log \log U)$,…

Data Structures and Algorithms · Computer Science 2025-10-23 William Kuszmaul , Jingxun Liang , Renfei Zhou

It has been proved that the spanning tree from a given network has the optimal synchronizability, which means the index $R=\lambda_{N}/\lambda_{2}$ reaches the minimum 1. Although the optimal synchronizability is corresponding to the…

Chaotic Dynamics · Physics 2015-05-13 An Zeng , Yanqing Hu , Zengru Di

This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…

Data Structures and Algorithms · Computer Science 2013-06-04 Amihood Amir , Gianni Franceschini , Roberto Grossi , Tsvi Kopelowitz , Moshe Lewenstein , Noa Lewenstein

The graph invariant EPT-sum has cropped up in several unrelated fields in later years: As an objective function for hierarchical clustering, as a more fine-grained version of the classical edge ranking problem, and, specifically when the…

Data Structures and Algorithms · Computer Science 2024-07-08 Svein Høgemo
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