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200 papers

The Physarum solver is an intuitive mechanism for solving optimisation problems based on the idea of an electrical network, whereby the conductivity is reinforced by the current. We show that the Physarum solver obtains the solution to the…

Optimization and Control · Mathematics 2011-01-28 Kentaro Ito , Anders Johansson , Toshiyuki Nakagaki , Atsushi Tero

We demonstrate how a genetic ring oscillator network with quorum sensing feedback can operate as a robust logic gate. Specifically we show how a range of logic functions, namely AND/NAND, OR/NOR and XOR/XNOR, can be realized by the system,…

Biological Physics · Physics 2014-04-14 Vidit Agrawal , Shivpal Singh Kang , Sudeshna Sinha

We report the first systematic study of designed two-input biochemical systems as information processing gates with favorable noise-transmission properties accomplished by modifying the gate's response from convex shape to sigmoid in both…

Biological Physics · Physics 2013-11-05 Saira Bakshi , Oleksandr Zavalov , Jan Halamek , Vladimir Privman , Evgeny Katz

We investigate algorithmic control of a large swarm of mobile particles (such as robots, sensors, or building material) that move in a 2D workspace using a global input signal (such as gravity or a magnetic field). We show that a maze of…

Emerging Technologies · Computer Science 2017-12-05 Aaron T. Becker , Erik D. Demaine , Sándor P. Fekete , Jarrett Lonsforda , Rose Morris-Wright

Purpose: Protoplasmic tubes of Physarum polycephalum, also know as Physarum Wires (PW), have been previously suggested as novel bio- electronic components. Until recently, practical examples of electronic circuits using PWs have been…

Emerging Technologies · Computer Science 2015-11-26 James G. H. Whiting , Richard Mayne , Nadine Moody , Ben de Lacy Costello , Andrew Adamatzky

A new implementation of many-body calculations is of paramount importance in the field of computational physics. In this study, we leverage the capabilities of Field Programmable Gate Arrays (FPGAs) for conducting quantum many-body…

Strongly Correlated Electrons · Physics 2025-04-17 Songtai Lv , Yang Liang , Yuchen Meng , Xiaochen Yao , Jincheng Xu , Yang Liu , Qibin Zheng , Haiyuan Zou

We report a study of a system which involves an enzymatic cascade realizing an AND logic gate, with an added photochemical processing of the output allowing to make the gate's response sigmoid in both inputs. New functional forms are…

Soft Condensed Matter · Physics 2013-11-05 Vladimir Privman , Brian E. Fratto , Oleksandr Zavalov , Jan Halamek , Evgeny Katz

Light-sensitive modification (ruthenium catalysed) of the Belousov-Zhabotinsky medium exhibits various regimes of excitability depending on the levels of illumination. For certain values of illumination the medium switches to a…

Pattern Formation and Solitons · Physics 2012-06-26 Ben De Lacy Costello , Andy Adamatzky , Ishrat Jahan , Liang Zhang

Any non-affine one-to-one binary gate can be wired together with suitable inputs to give AND, OR, NOT and fan-out gates, and so suffices to construct a general-purpose computer.

Quantum Physics · Physics 2015-04-15 Seth Lloyd

Owing to its potential advantages such as scalability, low latency and power efficiency, optical computing has seen rapid advances over the last decades. A core unit of a potential all-optical processor would be the NAND gate, which can be…

Optics · Physics 2022-05-04 Yi Luo , Deniz Mengu , Aydogan Ozcan

Two-qubit logical gates are proposed on the basis of two atoms trapped in a cavity setup. Losses in the interaction by spontaneous transitions are efficiently suppressed by employing adiabatic transitions and the Zeno effect. Dynamical and…

Quantum Physics · Physics 2009-11-07 Jiannis Pachos , Herbert Walther

We propose and analyze an approach to realize quantum computation and simulation using fermionic particles under quantum gas microscopes. Our work is inspired by a recent experimental demonstration of large-scale quantum registers, where…

Quantum Physics · Physics 2023-06-07 Xiangkai Sun , Di Luo , Soonwon Choi

We describe a parser of English effectuated by biologically plausible neurons and synapses, and implemented through the Assembly Calculus, a recently proposed computational framework for cognitive function. We demonstrate that this device…

Computation and Language · Computer Science 2021-08-05 Daniel Mitropolsky , Michael J. Collins , Christos H. Papadimitriou

Multi-valued logic gates, which can handle quaternary numbers as inputs, are developed by exploiting the ballistic transport properties of quantum point contacts in series. The principle of a logic gate that finds the minimum of two…

Mesoscale and Nanoscale Physics · Physics 2014-02-26 M. Seo , C. Hong , S. -Y. Lee , H. K. Choi , N. Kim , Y. Chung , V. Umansky , D. Mahalu

Recently, it was shown that the amoeba-like cell {\it Physarum polycephalum} when exposed to a pattern of periodic environmental changes learns and adapts its behavior in anticipation of the next stimulus to come. Here we show that such…

Cell Behavior · Quantitative Biology 2009-11-21 Yuriy V. Pershin , Steven La Fontaine , Massimiliano Di Ventra

Slime mould Physarum polycephalum builds up sophisticated networks to transport nutrients between distant part of its extended body. The slime mould's protoplasmic network is optimised for maximum coverage of nutrients yet minimum energy…

Pattern Formation and Solitons · Physics 2015-03-19 Andrew Adamatzky , Selim G. Akl

The elucidation upon fly's neuronal patterns as a link to computer graphics and memory cards I/O's, is investigated for the phenomenon by propounding a unified theory of Einstein's two known relativities. It is conclusive that flies could…

Computational Engineering, Finance, and Science · Computer Science 2009-12-05 Philip B. Alipour

We have studied a system composed by two endohedral fullerene molecules. We have found that this system can be used as good candidate for the realization of Quantum Gates Each of these molecules encapsules an atom carrying a spin,therefore…

Quantum Physics · Physics 2009-11-11 M. S. Garelli , F. V. Kusmartsev

Computing based on biochemical processes is a newest rapidly developing field of unconventional information and signal processing. In this paper we present results of our research in the field of biochemical computing and summarize the…

Active fluid transport is a hallmark of many biological transport networks. While animal circulatory systems generally rely on a single heart to drive flows, other organisms employ decentralized local pumps to distribute fluids and…

Biological Physics · Physics 2024-01-04 Adam B. Dionne , Katharine E. Jensen , Henrik Ronellenfitsch