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In this work we analyze the solutions of a simple system of coupled phase oscillators in which the connectivity is learned dynamically. The model is inspired in the process of learning of birdsong by oscine birds. An oscillator acts as the…

Neurons and Cognition · Quantitative Biology 2009-11-11 Marcos A. Trevisan , Sebastian Bouzat , Ines Samengo , Gabriel B. Mindlin

In this short note, we discuss the basic approach to computational modeling of dynamical systems. If a dynamical system contains multiple time scales, ranging from very fast to slow, computational solution of the dynamical system can be…

Numerical Analysis · Mathematics 2012-05-15 Johan Jansson , Claes Johnson , Anders Logg

Analyzing synchronized nonlinear oscillators is one of the most important and attractive topics in nonlinear science. By understanding the interactions between the oscillators, we can figure out the synchronization process. A promising…

Adaptation and Self-Organizing Systems · Physics 2025-02-05 Yuka Hashimoto , Masahiro Ikeda , Hiroya Nakao , Yoshinobu Kawahara

Continuous adaptation to variable environments is crucial for the survival of living organisms. Here, we analyze how adaptation, forecasting, and resource mobilization towards a target state, termed actionability, interact to determine…

Cell Behavior · Quantitative Biology 2024-04-15 Jose M. G. Vilar , Leonor Saiz

Ecological models traditionally explain stability and coexistence through pairwise interactions among species. These interactions can also involve groups of three or more species, higher-order interactions, which recent theory suggests can…

Populations and Evolution · Quantitative Biology 2025-10-07 Marc Duran-Sala , Sandro Meloni , Violeta Calleja-Solanas

The mammalian circadian system comprises a network of cell-autonomous oscillators, spanning from the central clock in the brain to peripheral clocks in other organs. These clocks are tightly coordinated to orchestrate rhythmic physiological…

Adaptation and Self-Organizing Systems · Physics 2022-12-29 Yitong Huang , Yuanzhao Zhang , Rosemary Braun

Motor proteins are active enzymatic molecules that drive a variety of biological processes, including transfer of genetic information, cellular transport, cell motility and muscles contraction. It is known that these biological molecular…

Soft Condensed Matter · Physics 2018-01-17 Luiza V. F. Gomes , Anatoly B. Kolomeisky

A symmetrical cubic discrete coupled logistic equation is proposed to model the symbiotic interaction of two isolated species. The coupling depends on the population size of both species and on a positive constant $\lambda$, named the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Ricardo Lopez-Ruiz , Daniele Fournier-Prunaret

We have developed a simple cellular automata model for nonlinearly coupled phase oscillators which can exhibit many important collective dynamical states found in other synchronizing systems. The state of our system is specified by a set of…

Adaptation and Self-Organizing Systems · Physics 2017-06-29 Amitava Banerjee , Muktish Acharyya

Pancreatic beta cells are coupled excitable oscillators that synchronize their activity via different communication pathways. Their oscillatory activity manifests itself on multiple timescales and consists of bursting electrical activity,…

Biological Physics · Physics 2023-09-14 Marko Šterk , Uroš Barać , Andraž Stožer , Marko Gosak

1. Spatial memory plays a role in the way animals perceive their environments, resulting in memory-informed movement patterns that are observable to ecologists. Developing mathematical techniques to understand how animals use memory in…

Quantitative Methods · Quantitative Biology 2022-02-17 Peter R. Thompson , Andrew E. Derocher , Mark A. Edwards , Mark A. Lewis

To explain the differentiation of stem cells in terms of dynamical systems theory, models of interacting cells with intracellular protein expression dynamics are analyzed and simulated. Simulations were carried out for all possible protein…

Cell Behavior · Quantitative Biology 2015-06-15 Yusuke Goto , Kunihiko Kaneko

We propose a minimal model of predator-swarm interactions which captures many of the essential dynamics observed in nature. Different outcomes are observed depending on the predator strength. For a "weak" predator, the swarm is able to…

Adaptation and Self-Organizing Systems · Physics 2014-03-14 Yuxin Chen , Theodore Kolokolnikov

Robust control of complex engineered and biological systems hinges on the integration of feedforward and feedback mechanisms. This is exemplified in neural motor control, where feedforward muscle co-contraction complements sensory-driven…

Optimization and Control · Mathematics 2026-03-06 Bastien Berret , Frédéric Jean

Multiple organs in a living system respond to environmental changes, and the signals from the organs regulate the physiological environment. Inspired by this biological feedback, we propose a simple autonomous system of active rotators to…

Statistical Mechanics · Physics 2020-03-02 Taegeun Song , Heetae Kim , Seung-Woo Son , Junghyo Jo

The co-adaptation of robots has been a long-standing research endeavour with the goal of adapting both body and behaviour of a system for a given task, inspired by the natural evolution of animals. Co-adaptation has the potential to…

Machine Learning · Computer Science 2023-02-08 Chang Rajani , Karol Arndt , David Blanco-Mulero , Kevin Sebastian Luck , Ville Kyrki

Coupled natural systems are generally modeled at multiple abstraction levels. Both structural scale and behavioral complexity of these models are determinants in the kinds of questions that can be posed and answered. As scale and complexity…

Computational Engineering, Finance, and Science · Computer Science 2018-07-23 Hessam S. Sarjoughian , William A. Boyd , Miguel F. Acevedo

Distributed control algorithms are known to reduce overall computation time compared to centralized control algorithms. However, they can result in inconsistent solutions leading to the violation of safety-critical constraints. Inconsistent…

Systems and Control · Electrical Eng. & Systems 2024-11-26 Julius Beerwerth , Maximilian Kloock , Bassam Alrifaee

Direct mechanical coupling is known to be critical for establishing synchronization among cilia. However, the actual role of the connections is still elusive - partly because controlled experiments in live samples are challenging. Here, we…

Soft Condensed Matter · Physics 2023-12-27 Yiming Xia , Zixian Hu , Da Wei , Ke Chen , Yi Peng , Mingcheng Yang

The 1+1 dimensional abelian Higgs model with fermions is a toy model for the theory of electroweak baryogenesis. We study the dynamics of the model with axially coupled fermions in real-time. The model is defined on a spacetime lattice to…

High Energy Physics - Phenomenology · Physics 2009-10-31 Gert Aarts , Jan Smit