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Presented with sensory challenges, living cells employ extensive noisy, fluctuating signalling and communication among themselves to compute a physiologically proper response which often results in symmetry breaking. We propose, based on…

Biological Physics · Physics 2022-06-17 Dean Korošak , Andraž Stožer , Marjan Slak Rupnik

Exploiting the mathematical curiosity of intransitive dice, we present a simple theoretical model for co-evolution that captures scales ranging from the genome of the individual to the system-wide emergence of species diversity. We study a…

Populations and Evolution · Quantitative Biology 2022-12-02 Julius B. Kirkegaard , Kim Sneppen

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

The dynamics of the 1+1 abelian Higgs model with fermions is studied in the large N_f approximation, on a real-time lattice. The Bose fields obey effective classical equations of motion which include the fermion back reaction. The dynamics…

High Energy Physics - Phenomenology · Physics 2007-05-23 Gert Aarts , Jan Smit

Poultry farms are an important contributor to the human food chain. Worldwide, humankind keeps an enormous number of domesticated birds (e.g. chickens) for their eggs and their meat, providing rich sources of low-fat protein. However,…

Machine Learning · Computer Science 2018-11-09 Alireza Abdoli , Amy C. Murillo , Chin-Chia M. Yeh , Alec C. Gerry , Eamonn J. Keogh

Synchronization occurs in many natural and technological systems, from cardiac pacemaker cells to coupled lasers. In the synchronized state, the individual cells or lasers coordinate the timing of their oscillations, but they do not move…

Adaptation and Self-Organizing Systems · Physics 2018-02-07 Kevin P. O'Keeffe , Hyunsuk Hong , Steven H. Strogatz

We introduce a generic, purely mechanical model for environment sensitive motion of mammalian cells that is applicable to chemotaxis, haptotaxis, and durotaxis as modes of motility. It is able to theoretically explain all relevant…

Cell Behavior · Quantitative Biology 2016-05-09 Patrick Bitter , Kristof Leon Beck , Peter Lenz

Adaptation to environmental change is a common property of biological systems. Cells initially respond to external changes in the environment, but after some time, they regain their original state. By considering an element consisting of…

Biological Physics · Physics 2015-05-13 Masayo Inoue , Kunihiko Kaneko

1. Animal movement patterns contribute to our understanding of variation in breeding success and survival of individuals, and the implications for population dynamics. 2. Over time, sensor technology for measuring movement patterns has…

Quantitative Methods · Quantitative Biology 2018-01-11 Leah R. Johnson , Philipp H. Boersch-Supan , Richard A. Phillips , Sadie J. Ryan

We propose a probabilistic framework for developing computational models of biological neural systems. In this framework, physiological recordings are viewed as discrete-time partial observations of an underlying continuous-time stochastic…

Neurons and Cognition · Quantitative Biology 2026-02-10 Ahmed ElGazzar , Marcel van Gerven

One of the best examples of traditional analysis of evolutionary stable strategies (ESS) is provided by the so called Dove-Hawk model. In this paper we present several enhancements to the model aimed at describing the evolution of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Pawel Sobkowicz

This paper treats the dynamics and scattering of a model of coupled oscillating systems, a finite dimensional one and a wave field on the half line. The coupling is realized producing the family of selfadjoint extensions of the suitably…

Mathematical Physics · Physics 2009-11-11 M. Bertini , D. Noja , A. Posilicano

We study a Kuramoto-like model of coupled identical phase oscillators on a network, where attractive and repulsive couplings are balanced dynamically due to nonlinearity in interaction. Under a week force, an oscillator tends to follow the…

Adaptation and Self-Organizing Systems · Physics 2015-01-28 Celso Freitas , Elbert Macau , Arkady Pikovsky

A hallmark of biological intelligence and control is combinatorial generalization: animals are able to learn various things, then piece them together in new combinations to produce appropriate outputs for new tasks. Inspired by the ability…

Neurons and Cognition · Quantitative Biology 2022-10-07 Sunny Duan , Mikail Khona , Adrian Bertagnoli , Sarthak Chandra , Ila Fiete

There is enormous interest -- both mathematically and in diverse applications -- in understanding the dynamics of coupled oscillator networks. The real-world motivation of such networks arises from studies of the brain, the heart, ecology,…

Dynamical Systems · Mathematics 2023-08-22 Stephen Coombes , Mustafa Sayli , Rüdiger Thul , Rachel Nicks , Mason A Porter , Yi Ming Lai

With the influx of complex and detailed tracking data gathered from electronic tracking devices, the analysis of animal movement data has recently emerged as a cottage industry amongst biostatisticians. New approaches of ever greater…

Applications · Statistics 2017-01-31 Toby A Patterson , Alison Parton , Roland Langrock , Paul G Blackwell , Len Thomas , Ruth King

In this article, we investigate symmetry properties of distributed systems of mobile robots. We consider a swarm of $n\in\mathbb{N}$ robots in the $\mathcal{OBLOT}$ model and analyze their collective $\mathcal{F}$sync dynamics using of…

Robotics · Computer Science 2025-03-11 Raphael Gerlach , Sören von der Gracht

This chapter explores dynamical structural equation models (DSEMs) and their nonlinear generalizations into sheaves of dynamical systems. It demonstrates these two disciplines on part of the food web in the Bering Sea. The translation from…

Algebraic Topology · Mathematics 2025-11-07 Michael Robinson , Michael L. Szulczewski , James T. Thorson

A computational tool for coarse-graining nonlinear systems of ordinary differential equations in time is discussed. Three illustrative model examples are worked out that demonstrate the range of capability of the method. This includes the…

Numerical Analysis · Mathematics 2017-11-23 Sabyasachi Chatterjee , Amit Acharya , Zvi Artstein

Open dynamical systems are mathematical models of machines that take input, change their internal state, and produce output. For example, one may model anything from neurons to robots in this way. Several open dynamical systems can be…

Dynamical Systems · Mathematics 2016-02-25 David I. Spivak
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