Related papers: Random Ancestor Trees
We consider the following question: how close to the ancestral root of a phylogenetic tree is the most recent common ancestor of $k$ species randomly sampled from the tips of the tree? For trees having shapes predicted by the Yule-Harding…
A preferential attachment model for a growing network incorporating deletion of edges is studied and the expected asymptotic degree distribution is analyzed. At each time step $t=1,2,\ldots$, with probability $\pi_1>0$ a new vertex with one…
Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…
We propose a model to create synthetic networks that may also serve as a narrative of a certain kind of infrastructure network evolution. It consists of an initialization phase with the network extending tree-like for minimum cost and a…
We study the growth of a reference network with aging of sites defined in the following way. Each new site of the network is connected to some old site with probability proportional (i) to the connectivity of the old site as in the…
Generating function equation has been derived for the probability distribution of the number of nodes with $k \ge 0$ outgoing lines in randomly evolving special trees. The stochastic properties of end-nodes (k=0) have been analyzed, and it…
We introduce a model for a growing random graph based on simultaneous reproduction of the vertices. The model can be thought of as a generalisation of the reproducing graphs of Southwell and Cannings and Bonato et al to allow for a random…
We consider a growing network in which an incoming node gets attached to the $i^{th}$ existing node with the probability $\Pi_i \propto {k_i}^{\beta}\tau_i^{\alpha}$, where $k_{i}$ is the degree of the $i^{th}$ node and $\tau_i$ its present…
We prove that for any fixed $k$, the probability that a random vertex of a random increasing plane tree is of rank $k$, that is, the probability that a random vertex is at distance $k$ from the leaves, converges to a constant $c_k$ as the…
Galled trees are studied as a recombination model in theoretic population genetics. This class of phylogenetic networks has been generalized to tree-child networks, normal networks and tree-based networks by relaxing a structural condition.…
We investigate a variety of statistical properties associated with the number of distinct degrees that exist in a typical network for various classes of networks. For a single realization of a network with N nodes that is drawn from an…
Phylogenetic networks are mathematical structures for modeling and visualization of reticulation processes in the study of evolution. Galled networks, reticulation visible networks, nearly-stable networks and stable-child networks are the…
We analyze growing networks that are built by enhanced redirection. Nodes are sequentially added and each incoming node attaches to a randomly chosen 'target' node with probability 1-r, or to the parent of the target node with probability…
We consider a preferential attachment model that incorporates an anomaly. Our goal is to understand the evolution of the network before and after the occurrence of the anomaly by studying the influence of the anomaly on the structural…
We study a supremacy distribution in evolving Barabasi-Albert networks. The supremacy $s_i$ of a node $i$ is defined as a total number of all nodes that are younger than $i$ and can be connected to it by a directed path. For a network with…
We investigate choice-driven network growth. In this model, nodes are added one by one according to the following procedure: for each addition event a set of target nodes is selected, each according to linear preferential attachment, and a…
Phylogenetic networks are a type of directed acyclic graph that represent how a set $X$ of present-day species are descended from a common ancestor by processes of speciation and reticulate evolution. In the absence of reticulate evolution,…
We consider models of evolving networks $\{\mathcal{G}_n:n\geq 0\}$ modulated by two parameters: an attachment function $f:\mathbb{N}_0\to\mathbb{R}_+$ and a (possibly random) attachment sequence $\{m_i:i\geq 1\}$. Starting with a single…
We examine a discrete random recursive tree growth process that, at each time step, either adds or deletes a node from the tree with probability $p$ and $1-p$, respectively. Node addition follows the usual uniform attachment model. For node…
In this paper, we explore how geometric structures can be grown exponentially fast. The studied processes start from an initial shape and apply a sequence of centralized growth operations to grow other shapes. We focus on the case where the…